Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01370 and H281DRAFT_01371 are separated by 278 nucleotidesH281DRAFT_01371 and H281DRAFT_01372 are separated by 107 nucleotidesH281DRAFT_01372 and H281DRAFT_01373 overlap by 4 nucleotidesH281DRAFT_01373 and H281DRAFT_01374 are separated by 307 nucleotides H281DRAFT_01370: H281DRAFT_01370 - phospholipase C, at 214,203 to 215,672 _01370 H281DRAFT_01371: H281DRAFT_01371 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 215,951 to 217,294 _01371 H281DRAFT_01372: H281DRAFT_01372 - protocatechuate 4,5-dioxygenase alpha subunit (EC 1.13.11.8), at 217,402 to 217,761 _01372 H281DRAFT_01373: H281DRAFT_01373 - protocatechuate 4,5-dioxygenase beta subunit (EC 1.13.11.8), at 217,758 to 218,603 _01373 H281DRAFT_01374: H281DRAFT_01374 - transcriptional regulator, GntR family, at 218,911 to 219,705 _01374
Group Condition H281DRAFT_01370 H281DRAFT_01371 H281DRAFT_01372 H281DRAFT_01373 H281DRAFT_01374
carbon source Gallic Acid (C) -0.0 N.D. -3.9 -3.0 -1.3
carbon source Hydroxy-L-Proline (C) +0.2 N.D. -1.7 -2.5 -1.0
carbon source Gallic Acid (C) -0.1 N.D. -0.7 -0.6 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -0.4 -0.7 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.6 -0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. +0.1 -0.5 -0.9
carbon source adipate (C) -0.0 N.D. -0.6 -0.0 -1.0
carbon source Hexanoic (C) -0.9 N.D. -0.1 -0.1 -0.5
carbon source 2-Deoxy-D-Ribose (C) -0.5 N.D. -1.0 -0.0 +0.5
phage Bu1_100 +0.1 N.D. +0.3 -1.3 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 N.D. +0.1 -0.7 -0.6
carbon source Dodecandioic (C) +0.1 N.D. -0.6 +0.3 -0.6
carbon source propionate (C) -0.2 N.D. +0.6 -0.3 -0.5
lb LB +0.2 N.D. -0.1 -0.8 +0.5
phage Bu1_100 -0.8 N.D. +0.4 +0.3 -0.2
carbon source succinate (C) +0.2 N.D. +0.5 -0.5 -0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -0.2 -0.7 +0.6
carbon source D-Glucose (C) -0.4 N.D. +0.4 -0.5 +0.4
ecofab LB in EcoFAB_3.5mL +0.3 N.D. -0.8 +0.2 +0.4
carbon source 4-Methyl-2-oxopentanoic (C) -0.4 N.D. +0.6 +0.4 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 N.D. -0.4 +0.6 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 N.D. +0.4 +0.6 -0.1
carbon source acetate (C) +0.3 N.D. +0.7 -0.4 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 N.D. +0.5 +0.2 +0.5
carbon source butyrate (C) +0.2 N.D. +0.6 +0.4 -0.4
carbon source Azelaic (C) -0.2 N.D. +0.8 +0.9 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. +0.5 -0.2 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. +1.3 -0.5 +0.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 N.D. +0.5 +0.6 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.7 N.D. +0.1 +0.4 +1.0
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