Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01338 and H281DRAFT_01339 are separated by 179 nucleotidesH281DRAFT_01339 and H281DRAFT_01340 overlap by 4 nucleotidesH281DRAFT_01340 and H281DRAFT_01341 are separated by 223 nucleotidesH281DRAFT_01341 and H281DRAFT_01342 are separated by 46 nucleotides H281DRAFT_01338: H281DRAFT_01338 - outer membrane transport energization protein ExbB, at 180,223 to 180,939 _01338 H281DRAFT_01339: H281DRAFT_01339 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 181,119 to 181,889 _01339 H281DRAFT_01340: H281DRAFT_01340 - phosphoglycolate phosphatase, at 181,886 to 182,578 _01340 H281DRAFT_01341: H281DRAFT_01341 - Protein of unknown function (DUF1488), at 182,802 to 183,080 _01341 H281DRAFT_01342: H281DRAFT_01342 - ABC-type phosphate/phosphonate transport system, substrate-binding protein, at 183,127 to 183,918 _01342
Group Condition H281DRAFT_01338 H281DRAFT_01339 H281DRAFT_01340 H281DRAFT_01341 H281DRAFT_01342
carbon source D-Glucose (C) -0.8 -0.7 -0.1 N.D. -0.2
carbon source propionate (C) -0.9 -0.5 -0.2 N.D. -0.0
carbon source Protocatechuic Acid (C) -0.6 -0.6 +0.1 N.D. -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.6 -0.7 -0.1 N.D. -0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.8 -0.2 -0.6 N.D. +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.4 -1.2 -0.0 N.D. +0.3
carbon source Gallic Acid (C) -0.2 -0.7 +0.0 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.5 -0.4 -0.5 N.D. +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.8 -0.6 -0.0 N.D. +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 -0.5 -0.3 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.7 -0.3 -0.4 N.D. -0.4
carbon source propionate (C) +0.5 -0.7 -0.2 N.D. -0.0
carbon source Hexanoic (C) -0.7 +0.3 -0.1 N.D. +0.2
carbon source Valeric (C) -0.4 +0.6 -0.3 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 -0.3 +0.0 N.D. +0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.0 -0.7 -0.1 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.7 +0.1 N.D. +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.5 -0.6 -0.1 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.3 +0.2 N.D. +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 -0.5 -0.2 N.D. +0.5
carbon source D-Glucose 20 mM (C) +0.2 -0.5 -0.2 N.D. +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 -0.4 -0.3 N.D. +0.5
phage Bu1_100 +0.5 +0.0 +0.3 N.D. -0.5
carbon source butyrate (C) +0.6 -0.5 +0.4 N.D. +0.1
carbon source Azelaic (C) +0.8 +0.2 -0.1 N.D. -0.2
carbon source butyrate (C) +0.5 +0.5 +0.2 N.D. -0.3
ecofab LB in EcoFAB_3.5mL +0.4 +0.5 -0.2 N.D. +0.2
phage Bu1_100 +0.2 +0.8 +0.6 N.D. -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.6 -0.1 +0.0 N.D. +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 +0.5 +0.4 N.D. +0.5
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