Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01319 and H281DRAFT_01320 are separated by 93 nucleotidesH281DRAFT_01320 and H281DRAFT_01321 are separated by 103 nucleotidesH281DRAFT_01321 and H281DRAFT_01322 overlap by 4 nucleotidesH281DRAFT_01322 and H281DRAFT_01323 are separated by 13 nucleotides H281DRAFT_01319: H281DRAFT_01319 - Uncharacterized protein, UPF0264 family, at 159,857 to 160,600 _01319 H281DRAFT_01320: H281DRAFT_01320 - Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases, at 160,694 to 161,284 _01320 H281DRAFT_01321: H281DRAFT_01321 - probable H4MPT-linked C1 transfer pathway protein, at 161,388 to 162,512 _01321 H281DRAFT_01322: H281DRAFT_01322 - Predicted ATP-dependent carboligase, ATP-grasp superfamily, at 162,509 to 163,642 _01322 H281DRAFT_01323: H281DRAFT_01323 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 163,656 to 164,402 _01323
Group Condition H281DRAFT_01319 H281DRAFT_01320 H281DRAFT_01321 H281DRAFT_01322 H281DRAFT_01323
carbon source Gallic Acid (C) -0.3 N.D. +0.4 -5.7 -0.3
carbon source Malonic (C) -3.1 N.D. -0.8 -0.7 +0.0
phage Bu1_100 -0.7 N.D. -0.1 -1.8 -0.1
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. -1.4 -0.2 -0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.2 N.D. -1.7 -0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 N.D. -1.3 -0.6 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 N.D. -0.8 -1.3 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.8 N.D. -1.2 -0.3 +0.0
carbon source Azelaic (C) +0.9 N.D. -0.7 -2.5 +0.1
carbon source D-Glucose (C) -0.9 N.D. -0.0 -0.9 -0.3
carbon source 2-Deoxy-D-Ribose (C) -0.2 N.D. -1.6 -0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 N.D. -0.9 +0.2 -0.6
carbon source propionate (C) -1.1 N.D. -0.0 -0.9 -0.1
carbon source D-Glucose (C) -0.6 N.D. +0.2 -1.5 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 N.D. -2.2 +0.6 -0.6
carbon source 4-Hydroxybenzoic Acid (C) -1.8 N.D. +0.4 +0.2 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 N.D. +0.5 -1.5 -0.4
lb LB +0.6 N.D. -0.7 -0.8 +0.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.1 -0.8 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.8 N.D. +0.7 -1.5 -0.3
carbon source butyrate (C) +1.2 N.D. -0.9 -0.2 -0.1
carbon source D-Glucose (C) +1.0 N.D. +0.1 -1.1 +0.1
carbon source Valeric (C) +0.4 N.D. -0.4 +0.9 -0.5
control NoPhageControl +0.5 N.D. +0.9 -0.8 +0.2
ecofab LB in EcoFAB_3.5mL +0.6 N.D. -0.6 +0.5 +0.3
carbon source Sebacic (C) +1.5 N.D. +0.1 +0.8 -0.1
carbon source adipate (C) +1.1 N.D. +0.9 +0.4 -0.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.6 N.D. +1.3 +0.6 +0.0
carbon source acetate (C) +1.2 N.D. +0.2 +1.0 +0.1
carbon source Hexanoic (C) +1.5 N.D. +0.3 +0.7 +0.2
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