Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01254 and H281DRAFT_01255 are separated by 126 nucleotidesH281DRAFT_01255 and H281DRAFT_01256 overlap by 31 nucleotidesH281DRAFT_01256 and H281DRAFT_01257 are separated by 231 nucleotidesH281DRAFT_01257 and H281DRAFT_01258 are separated by 47 nucleotides H281DRAFT_01254: H281DRAFT_01254 - Fatty acid desaturase, at 89,739 to 90,719 _01254 H281DRAFT_01255: H281DRAFT_01255 - transcriptional regulator, TetR family, at 90,846 to 91,139 _01255 H281DRAFT_01256: H281DRAFT_01256 - hypothetical protein, at 91,109 to 91,486 _01256 H281DRAFT_01257: H281DRAFT_01257 - Catechol 2,3-dioxygenase, at 91,718 to 92,116 _01257 H281DRAFT_01258: H281DRAFT_01258 - transcriptional regulator, LysR family, at 92,164 to 93,117 _01258
Group Condition H281DRAFT_01254 H281DRAFT_01255 H281DRAFT_01256 H281DRAFT_01257 H281DRAFT_01258
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 N.D. -0.3 -1.1 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 N.D. -0.5 -0.3 -0.5
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 N.D. -1.0 +0.3 -0.7
carbon source butyrate (C) -0.2 N.D. +0.8 -1.4 -0.2
carbon source Protocatechuic Acid (C) +0.1 N.D. +0.4 -1.6 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.0 N.D. +0.2 -1.4 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.0 N.D. +0.9 -0.9 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 N.D. -1.2 +0.5 -0.0
carbon source Hexanoic (C) -0.1 N.D. +0.3 -1.3 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 N.D. +0.3 -1.0 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.0 N.D. -0.6 +0.4 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.1 N.D. +0.1 -1.0 +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 N.D. -0.9 +0.3 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 N.D. +1.0 -1.2 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 N.D. -0.2 +0.6 -0.7
phage Bu1_100 -0.1 N.D. +0.1 +0.6 -0.7
carbon source Malonic (C) -0.0 N.D. -0.5 +0.7 -0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 N.D. +0.7 -1.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +0.8 -0.9 +0.1
ecofab LB in EcoFAB_3.5mL +0.1 N.D. -0.5 +0.4 +0.3
carbon source Malonic (C) -0.1 N.D. +0.3 +0.6 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.0 N.D. -0.2 +0.9 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.0 N.D. +0.8 -0.4 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 N.D. +1.1 -0.8 +0.3
carbon source Hexanoic (C) +0.0 N.D. +0.8 -0.4 +0.1
carbon source acetate (C) +0.1 N.D. +0.6 +0.4 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.2 N.D. +0.8 -0.3 +0.3
carbon source D-Glucose (C) +0.1 N.D. +0.8 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.5 -0.0 +0.7
carbon source succinate (C) -0.1 N.D. +0.7 +0.8 +0.2
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