Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01242 and H281DRAFT_01243 are separated by 57 nucleotidesH281DRAFT_01243 and H281DRAFT_01244 overlap by 4 nucleotidesH281DRAFT_01244 and H281DRAFT_01245 are separated by 17 nucleotidesH281DRAFT_01245 and H281DRAFT_01246 are separated by 144 nucleotides H281DRAFT_01242: H281DRAFT_01242 - CDP-diacylglycerol pyrophosphatase, at 79,105 to 79,746 _01242 H281DRAFT_01243: H281DRAFT_01243 - lipoprotein, YaeC family, at 79,804 to 80,616 _01243 H281DRAFT_01244: H281DRAFT_01244 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 80,613 to 81,662 _01244 H281DRAFT_01245: H281DRAFT_01245 - arylsulfatase, at 81,680 to 83,638 _01245 H281DRAFT_01246: H281DRAFT_01246 - hypothetical protein, at 83,783 to 84,214 _01246
Group Condition H281DRAFT_01242 H281DRAFT_01243 H281DRAFT_01244 H281DRAFT_01245 H281DRAFT_01246
phage Bu1_10 -0.1 -0.7 -0.6 +0.2 -1.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.8 +0.7 -3.9 -0.1 -0.0
carbon source Protocatechuic Acid (C) -0.6 +0.5 -0.5 +0.0 -1.9
carbon source propionate (C) -0.4 -1.2 -0.2 +0.1 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.5 -0.0 -0.8 -0.1 -0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.6 -1.0 -0.1 +0.7
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.4 -0.7 -1.1 -0.1 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -1.4 -0.5 -0.2 +1.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.8 -0.7 -0.0 +0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.8 -0.0 -0.7 +0.0 -0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.0 +0.3 -1.0 -0.0 +0.9
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +1.1 +0.6 +0.0 +0.0 -1.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 -0.9 +0.1 -0.1 +0.5
carbon source Gallic Acid (C) -0.2 +0.6 -0.7 -0.1 +0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +1.2 +0.2 -0.5 -0.1 -0.4
carbon source Gallic Acid (C) +1.0 +0.2 +0.2 +0.0 -0.8
phage Bu1_100 +0.3 +0.3 -0.7 +0.1 +0.6
carbon source butyrate (C) -0.8 +0.5 +0.6 -0.0 +0.5
phage Bu1_100 +1.0 -1.3 -0.1 +0.0 +1.2
carbon source propionate (C) +0.4 -0.6 +0.4 +0.2 +0.5
carbon source Hexanoic (C) +1.0 -0.8 +0.0 +0.0 +0.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.1 +0.9 -0.9 +0.1 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.8 +1.2 +0.3 +0.1 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 -0.1 +0.7 +0.2 +0.9
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 -0.2 -0.5 +0.0 +1.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.8 +0.8 +0.3 +0.1 -0.5
carbon source acetate (C) +0.4 -0.1 +1.2 -0.1 +0.9
carbon source 4-Hydroxybenzoic Acid (C) +0.4 +0.9 +0.6 +0.2 +0.5
carbon source Azelaic (C) +0.4 +1.0 +0.6 +0.0 +0.9
carbon source adipate (C) +0.2 +0.7 +1.0 +0.1 +1.2
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