Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01237 and H281DRAFT_01238 are separated by 457 nucleotidesH281DRAFT_01238 and H281DRAFT_01239 are separated by 325 nucleotidesH281DRAFT_01239 and H281DRAFT_01240 are separated by 130 nucleotidesH281DRAFT_01240 and H281DRAFT_01241 are separated by 14 nucleotides H281DRAFT_01237: H281DRAFT_01237 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 73,994 to 74,674 _01237 H281DRAFT_01238: H281DRAFT_01238 - FMN reductase, at 75,132 to 75,791 _01238 H281DRAFT_01239: H281DRAFT_01239 - hypothetical protein, at 76,117 to 76,332 _01239 H281DRAFT_01240: H281DRAFT_01240 - hypothetical protein, at 76,463 to 77,380 _01240 H281DRAFT_01241: H281DRAFT_01241 - mandelamide amidase, at 77,395 to 78,849 _01241
Group Condition H281DRAFT_01237 H281DRAFT_01238 H281DRAFT_01239 H281DRAFT_01240 H281DRAFT_01241
phage Bu1_100 -1.5 -0.7 -0.4 -0.4 +0.1
phage Bu1_10 -1.5 +0.0 -0.3 -0.4 -0.1
carbon source Dodecandioic (C) -1.8 -0.4 +0.4 -0.4 +0.2
carbon source butyrate (C) -2.1 -0.2 +0.7 -0.0 +0.1
carbon source adipate (C) -1.1 -1.6 +0.6 +0.2 +0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -1.0 +0.3 +0.3 -0.1 -0.4
carbon source acetate (C) -0.5 -0.6 +0.2 -0.2 +0.4
carbon source adipate (C) +0.5 -1.4 -0.2 +0.5 +0.3
carbon source Azelaic (C) -0.8 -0.4 +0.4 +0.4 +0.0
carbon source succinate (C) -0.9 +0.4 -0.4 +0.8 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +0.7 -0.5 -0.4 +0.2
carbon source Valeric (C) -1.2 +0.3 +0.5 +0.1 +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.6 -0.3 +0.3 +0.4 -0.3
carbon source Malonic (C) -0.7 +0.3 +0.8 +0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 -0.2 +0.3 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.3 +1.3 -0.1 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +2.0 -0.4 +0.2 -0.5 -0.2
carbon source Valeric (C) -0.5 +0.3 +1.4 -0.2 +0.2
carbon source 4-Methyl-2-oxopentanoic (C) +1.0 -0.3 +0.2 -0.1 +0.3
carbon source propionate (C) -0.3 +0.5 +0.5 +0.7 -0.1
carbon source 2-Deoxy-D-Ribose (C) -0.5 +0.6 +0.7 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.2 +1.6 +0.1 -0.1
carbon source D-Glucose (C) +0.9 +0.2 +0.4 +0.2 -0.2
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 +0.5 +0.5 +0.9 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.1 +0.1 +0.2 +0.7 -0.4
carbon source D-Glucose (C) +1.2 -0.2 +0.3 +0.2 +0.3
carbon source Hexanoic (C) -0.2 +0.1 +1.1 +0.2 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 +0.0 +1.2 -0.1 +0.2
carbon source D-Glucose (C) +1.3 +0.4 +0.3 +0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +1.0 +0.7 +1.1 +0.6 -0.1
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