Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01196 and H281DRAFT_01197 are separated by 106 nucleotidesH281DRAFT_01197 and H281DRAFT_01198 are separated by 83 nucleotidesH281DRAFT_01198 and H281DRAFT_01199 are separated by 37 nucleotidesH281DRAFT_01199 and H281DRAFT_01200 overlap by 4 nucleotides H281DRAFT_01196: H281DRAFT_01196 - transcriptional regulator, PadR family, at 33,472 to 34,284 _01196 H281DRAFT_01197: H281DRAFT_01197 - NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains, at 34,391 to 35,215 _01197 H281DRAFT_01198: H281DRAFT_01198 - Predicted arabinose efflux permease, MFS family, at 35,299 to 36,561 _01198 H281DRAFT_01199: H281DRAFT_01199 - Enoyl-CoA hydratase/carnithine racemase, at 36,599 to 37,759 _01199 H281DRAFT_01200: H281DRAFT_01200 - short chain enoyl-CoA hydratase (EC 4.2.1.17), at 37,756 to 38,592 _01200
Group Condition H281DRAFT_01196 H281DRAFT_01197 H281DRAFT_01198 H281DRAFT_01199 H281DRAFT_01200
carbon source 4-Methyl-2-oxopentanoic (C) -0.0 +0.0 +0.1 -2.4 -2.6
carbon source 4-Methyl-2-oxopentanoic (C) -0.3 +0.0 +0.1 -1.9 -2.1
carbon source butyrate (C) -0.2 +0.3 -0.0 -2.2 -1.6
carbon source butyrate (C) -0.2 +0.5 +0.1 -1.8 -2.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.1 -0.3 -0.2 +0.1 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.0 +0.1 +0.0 -0.2 -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -0.5 -0.2 -0.1 -0.4
carbon source Valeric (C) -0.4 +0.3 -0.1 -0.3 -0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.2 -0.4 +0.1 +0.1 -0.6
carbon source Hexanoic (C) -0.8 +0.2 -0.0 -0.3 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 -0.8 +0.3 -0.2 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 +0.4 -0.0 +0.1 -0.9
carbon source 2-furoic (C) +0.2 -0.2 +0.2 -0.2 -0.5
carbon source 2'-Deoxyinosine 10 mM (C) -0.6 -0.2 +0.3 +0.3 -0.2
carbon source D,L-Lactate (C) -0.5 +0.4 -0.0 +0.1 -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.3 +0.1 +0.1 +0.3 -0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.7 +0.5 -0.1 +0.4 -0.0
carbon source propionate (C) -0.5 +0.4 +0.1 -0.0 +0.2
carbon source acetate (C) -0.4 +0.2 -0.1 +0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.4 -0.0 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.2 +0.0 -0.2 -0.3
phage Bu1_100 +0.8 -0.2 +0.1 -0.3 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.5 +0.1 -0.0 +0.5 +0.6
carbon source succinate (C) -0.2 +0.4 +0.1 +0.1 +0.4
carbon source D-Glucose (C) -0.2 +0.3 +0.1 +0.2 +0.5
carbon source Dodecandioic (C) +0.2 +0.2 -0.1 +0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.1 -0.0 -0.2 +0.7
carbon source Hexanoic (C) +0.4 +0.3 -0.0 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.1 -0.0 +0.1 +0.5
control NoPhageControl +0.4 +0.4 +0.0 -0.1 +0.6
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