Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01188 and H281DRAFT_01189 are separated by 344 nucleotidesH281DRAFT_01189 and H281DRAFT_01190 are separated by 76 nucleotidesH281DRAFT_01190 and H281DRAFT_01191 overlap by 4 nucleotidesH281DRAFT_01191 and H281DRAFT_01192 overlap by 8 nucleotides H281DRAFT_01188: H281DRAFT_01188 - 3-oxoacyl-[acyl-carrier protein] reductase, at 24,757 to 25,509 _01188 H281DRAFT_01189: H281DRAFT_01189 - transcriptional regulator, AraC family, at 25,854 to 26,633 _01189 H281DRAFT_01190: H281DRAFT_01190 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 26,710 to 27,978 _01190 H281DRAFT_01191: H281DRAFT_01191 - Uncharacterized anaerobic dehydrogenase, at 27,975 to 28,241 _01191 H281DRAFT_01192: H281DRAFT_01192 - Glycine/D-amino acid oxidase (deaminating), at 28,234 to 29,415 _01192
Group Condition H281DRAFT_01188 H281DRAFT_01189 H281DRAFT_01190 H281DRAFT_01191 H281DRAFT_01192
carbon source Hydroxy-L-Proline (C) -0.0 N.D. -3.3 N.D. -3.3
carbon source Azelaic (C) +0.1 N.D. -0.5 N.D. -5.0
carbon source 4-Hydroxybenzoic Acid (C) -0.2 N.D. -0.6 N.D. -2.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 N.D. -1.4 N.D. -1.0
phage Bu1_100 -1.1 N.D. +0.4 N.D. -1.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 N.D. -0.4 N.D. -1.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. +0.5 N.D. -2.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.2 N.D. -0.6 N.D. -0.8
phage Bu1_10 -0.3 N.D. +0.3 N.D. -0.9
carbon source butyrate (C) +0.6 N.D. -0.2 N.D. -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.1 N.D. -1.0 N.D. +0.9
carbon source D-Glucose (C) +0.5 N.D. +0.7 N.D. -1.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 N.D. -0.5 N.D. +0.8
carbon source Dodecandioic (C) +0.6 N.D. +0.6 N.D. -0.4
carbon source Malonic (C) +0.3 N.D. +1.0 N.D. -0.3
phage Bu1_100 -0.2 N.D. +0.3 N.D. +1.1
control NoPhageControl -0.1 N.D. +0.7 N.D. +1.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 N.D. +0.6 N.D. +1.3
carbon source Pimelic (C) +0.6 N.D. +0.7 N.D. +0.3
carbon source propionate (C) +0.7 N.D. +1.1 N.D. -0.0
carbon source adipate (C) +0.2 N.D. +1.4 N.D. +0.2
carbon source D-Glucose (C) +0.2 N.D. +0.9 N.D. +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 N.D. +1.0 N.D. +0.9
carbon source Valeric (C) +0.8 N.D. +1.3 N.D. +0.0
carbon source acetate (C) +0.5 N.D. +1.2 N.D. +0.4
carbon source Protocatechuic Acid (C) +1.1 N.D. +0.8 N.D. +0.2
carbon source succinate (C) +0.8 N.D. +0.7 N.D. +0.7
carbon source Sebacic (C) +0.8 N.D. +0.5 N.D. +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. +0.6 N.D. +1.4
carbon source Protocatechuic Acid (C) +0.6 N.D. +1.6 N.D. +0.3
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