Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01151 and H281DRAFT_01152 overlap by 4 nucleotidesH281DRAFT_01152 and H281DRAFT_01153 are separated by 227 nucleotidesH281DRAFT_01153 and H281DRAFT_01154 are separated by 111 nucleotidesH281DRAFT_01154 and H281DRAFT_01155 are separated by 325 nucleotides H281DRAFT_01151: H281DRAFT_01151 - ceramide glucosyltransferase, at 1,300,468 to 1,301,634 _01151 H281DRAFT_01152: H281DRAFT_01152 - hopanoid biosynthesis associated radical SAM protein HpnJ, at 1,301,631 to 1,303,052 _01152 H281DRAFT_01153: H281DRAFT_01153 - hypothetical protein, at 1,303,280 to 1,303,660 _01153 H281DRAFT_01154: H281DRAFT_01154 - cold-shock DNA-binding protein family, at 1,303,772 to 1,303,975 _01154 H281DRAFT_01155: H281DRAFT_01155 - 2,5-dioxopentanoate dehydrogenase (NAD+), at 1,304,301 to 1,305,746 _01155
Group Condition H281DRAFT_01151 H281DRAFT_01152 H281DRAFT_01153 H281DRAFT_01154 H281DRAFT_01155
carbon source Glycerol (C) -0.3 N.D. -1.0 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 N.D. -0.8 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 N.D. -0.7 N.D. N.D.
phage Bu1_100 -0.6 N.D. -0.3 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.7 N.D. -0.2 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.4 N.D. -0.5 N.D. N.D.
carbon source Gallic Acid (C) +0.0 N.D. -0.8 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 N.D. -0.9 N.D. N.D.
control NoPhageControl -0.3 N.D. -0.5 N.D. N.D.
carbon source D-Glucose (C) +0.1 N.D. -0.6 N.D. N.D.
carbon source acetate (C) +0.4 N.D. -0.8 N.D. N.D.
carbon source Protocatechuic Acid (C) +0.2 N.D. -0.5 N.D. N.D.
carbon source Protocatechuic Acid (C) +0.4 N.D. -0.5 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.7 N.D. -0.7 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 N.D. -0.3 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 N.D. -0.2 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.7 N.D. -0.3 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.1 N.D. +0.6 N.D. N.D.
carbon source D-Glucose 20 mM (C) +0.7 N.D. -0.1 N.D. N.D.
carbon source propionate (C) +0.4 N.D. +0.3 N.D. N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 N.D. +0.5 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.8 N.D. -0.1 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 N.D. +0.5 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.6 N.D. +0.2 N.D. N.D.
carbon source Hydroxy-L-Proline (C) +0.6 N.D. +0.3 N.D. N.D.
carbon source adipate (C) +0.6 N.D. +0.3 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.6 N.D. +0.3 N.D. N.D.
phage Bu1_10 +0.5 N.D. +0.5 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.6 N.D. +0.5 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.6 N.D. +0.6 N.D. N.D.
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