Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01145 and H281DRAFT_01146 overlap by 11 nucleotidesH281DRAFT_01146 and H281DRAFT_01147 are separated by 12 nucleotidesH281DRAFT_01147 and H281DRAFT_01148 are separated by 307 nucleotidesH281DRAFT_01148 and H281DRAFT_01149 are separated by 0 nucleotides H281DRAFT_01145: H281DRAFT_01145 - hopanoid biosynthesis associated protein HpnK, at 1,294,057 to 1,294,953 _01145 H281DRAFT_01146: H281DRAFT_01146 - ceramide glucosyltransferase, at 1,294,943 to 1,296,316 _01146 H281DRAFT_01147: H281DRAFT_01147 - hypothetical protein, at 1,296,329 to 1,296,781 _01147 H281DRAFT_01148: H281DRAFT_01148 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,297,089 to 1,297,748 _01148 H281DRAFT_01149: H281DRAFT_01149 - two-component system, OmpR family, sensor histidine kinase QseC, at 1,297,749 to 1,299,257 _01149
Group Condition H281DRAFT_01145 H281DRAFT_01146 H281DRAFT_01147 H281DRAFT_01148 H281DRAFT_01149
carbon source Valeric (C) -0.1 -0.1 N.D. -0.3 -1.5
phage Bu1_100 -1.8 +0.3 N.D. -0.7 +0.2
carbon source Azelaic (C) -0.2 +0.0 N.D. -0.5 -1.3
carbon source Phenylacetic (C) -0.8 -0.2 N.D. -0.4 -0.5
carbon source Hexanoic (C) -0.2 -0.1 N.D. -1.3 -0.3
carbon source propionate (C) -0.6 +0.2 N.D. -0.6 -0.8
carbon source Malonic (C) -0.5 +0.1 N.D. +0.3 -1.5
carbon source Protocatechuic Acid (C) +0.2 -0.1 N.D. -1.7 +0.2
carbon source D-Glucose (C) -1.2 -0.2 N.D. -0.5 +0.7
carbon source adipate (C) -1.5 +0.3 N.D. +0.8 -0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.7 -0.2 N.D. -0.7 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 +0.3 N.D. +0.3 -1.1
carbon source Protocatechuic Acid (C) -0.0 +0.2 N.D. +0.4 -1.3
carbon source D-Glucose (C) -0.7 +0.2 N.D. +0.3 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.2 N.D. +0.3 -1.0
carbon source Malonic (C) -0.6 -0.7 N.D. +1.2 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.7 +0.2 N.D. -0.2 -0.8
carbon source Glycerol (C) +0.3 -0.2 N.D. -0.8 +0.8
carbon source Valeric (C) -1.4 +0.4 N.D. +0.2 +0.9
carbon source 2'-Deoxyinosine 10 mM (C) +0.9 +0.3 N.D. -0.0 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.5 N.D. +0.5 -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.2 N.D. -0.4 +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.4 N.D. -0.2 +1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.5 N.D. +0.1 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.2 N.D. -0.1 +2.0
carbon source 4-Hydroxybenzoic Acid (C) +0.6 +0.2 N.D. -0.2 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.7 +0.2 N.D. +0.5 +0.5
carbon source D-Glucose (C) -0.1 -0.0 N.D. +0.5 +1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.1 N.D. +0.6 +1.8
carbon source Hexanoic (C) +0.2 +0.2 N.D. +1.3 +0.2
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