Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01142 and H281DRAFT_01143 overlap by 8 nucleotidesH281DRAFT_01143 and H281DRAFT_01144 are separated by 325 nucleotidesH281DRAFT_01144 and H281DRAFT_01145 are separated by 23 nucleotidesH281DRAFT_01145 and H281DRAFT_01146 overlap by 11 nucleotides H281DRAFT_01142: H281DRAFT_01142 - 2,5-furandicarboxylate decarboxylase 2, at 1,290,651 to 1,291,307 _01142 H281DRAFT_01143: H281DRAFT_01143 - 2,5-furandicarboxylate decarboxylase 1, at 1,291,300 to 1,292,784 _01143 H281DRAFT_01144: H281DRAFT_01144 - transcriptional regulator, LysR family, at 1,293,110 to 1,294,033 _01144 H281DRAFT_01145: H281DRAFT_01145 - hopanoid biosynthesis associated protein HpnK, at 1,294,057 to 1,294,953 _01145 H281DRAFT_01146: H281DRAFT_01146 - ceramide glucosyltransferase, at 1,294,943 to 1,296,316 _01146
Group Condition H281DRAFT_01142 H281DRAFT_01143 H281DRAFT_01144 H281DRAFT_01145 H281DRAFT_01146
carbon source 2-furoic (C) -2.6 -2.4 -6.8 +0.0 +0.1
carbon source butyrate (C) -4.6 -0.1 -1.1 +0.1 +0.3
carbon source Hexanoic (C) -0.7 -0.0 -1.2 -0.2 -0.1
carbon source D-Glucose (C) +0.4 -0.1 -0.9 -1.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.0 -0.6 -0.6 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 +0.0 -1.0 -0.1 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 +0.2 -0.8 -1.0 -0.1
phage Bu1_10 +0.5 -0.4 -1.7 +0.3 -0.5
carbon source Malonic (C) -0.4 -0.5 +0.5 -0.6 -0.7
carbon source Valeric (C) +0.1 -0.3 -0.6 -1.4 +0.4
carbon source succinate (C) +0.5 -0.2 -1.6 +0.0 -0.2
carbon source adipate (C) -0.5 -0.0 +0.2 -1.5 +0.3
carbon source Azelaic (C) +0.2 -0.6 -1.0 -0.2 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.2 +0.3 +0.2 -0.2 -0.7
phage Bu1_100 +0.7 -0.3 -0.4 -1.8 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.6 -0.2 -1.1 +0.5 +0.0
carbon source D-Glucose (C) -0.3 +0.2 -1.2 +0.1 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.8 +0.3 -0.6 +0.3 -0.3
carbon source Malonic (C) -0.6 +0.1 -0.9 -0.0 +0.4
carbon source Sebacic (C) +0.3 -0.3 -0.8 +0.1 -0.3
carbon source propionate (C) -1.3 -0.1 +0.3 +0.2 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 -0.1 -0.8 -0.4 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 -0.3 -0.6 +0.2 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 +0.2 -0.5 +0.7 +0.1
carbon source D-Glucose (C) +0.8 -0.1 -0.4 +0.2 -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.8 -0.2 +0.3 +0.7 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 +0.1 +0.6 +0.6 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.9 -0.8 +0.2 -0.3 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.7 -0.1 +0.3 +0.9 +0.3
phage Bu1_100 +1.2 +0.0 -0.3 -0.1 +0.2
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