Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01125 and H281DRAFT_01126 overlap by 4 nucleotidesH281DRAFT_01126 and H281DRAFT_01127 overlap by 4 nucleotidesH281DRAFT_01127 and H281DRAFT_01128 are separated by 6 nucleotidesH281DRAFT_01128 and H281DRAFT_01129 are separated by 74 nucleotides H281DRAFT_01125: H281DRAFT_01125 - protein of unknown function (DUF2760), at 1,267,144 to 1,267,707 _01125 H281DRAFT_01126: H281DRAFT_01126 - Molecular chaperone DnaK (HSP70), at 1,267,704 to 1,269,563 _01126 H281DRAFT_01127: H281DRAFT_01127 - Molecular chaperone, at 1,269,560 to 1,272,529 _01127 H281DRAFT_01128: H281DRAFT_01128 - phosphonoacetaldehyde hydrolase, at 1,272,536 to 1,273,339 _01128 H281DRAFT_01129: H281DRAFT_01129 - 2-aminoethylphosphonate-pyruvate transaminase, at 1,273,414 to 1,274,664 _01129
Group Condition H281DRAFT_01125 H281DRAFT_01126 H281DRAFT_01127 H281DRAFT_01128 H281DRAFT_01129
carbon source butyrate (C) -2.2 -0.4 -0.1 +0.1 -0.1
carbon source 2-Deoxy-D-Ribose (C) -1.2 -0.1 -0.1 -0.6 -0.5
carbon source 2-Deoxy-D-Ribose (C) -1.4 -0.2 -0.3 -0.2 -0.3
carbon source 2-Deoxy-D-Ribose (C) -1.7 -0.2 +0.2 -0.2 -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.8 -0.1 +0.6 -0.5 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.5 -0.0 -0.1 -0.1 -0.5
carbon source D-Glucose 20 mM (C) -1.8 -0.0 -0.1 +0.1 +0.0
carbon source D-Glucose 20 mM (C) -1.9 +0.1 -0.1 -0.1 +0.3
carbon source 2'-Deoxyinosine 5 mM (C) -1.4 +0.0 +0.0 -0.1 -0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.8 +0.0 +0.2 -0.5 -0.5
carbon source adipate (C) -1.3 -0.2 -0.4 +0.1 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.3 +0.0 -0.2 +0.0 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.3 -0.2 -0.2 -0.1 +0.4
phage Bu1_100 -1.2 -0.2 +0.1 -0.1 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -1.1 -0.1 +0.3 +0.0 -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.5 +0.1 +0.3 -0.1 -0.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.3 +0.1 +0.0 +0.0 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.7 -0.3 +0.4 -0.1 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -1.0 -0.0 +0.6 -0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.2 -0.3 +0.3 +0.4
phage Bu1_10 -0.5 -0.3 +0.4 -0.2 +0.7
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 -0.1 -0.5 +0.2 -0.3
lb LB -0.6 -0.1 +0.1 +0.2 +0.7
carbon source Protocatechuic Acid (C) +1.0 -0.3 +0.1 -0.1 -0.3
carbon source adipate (C) +1.0 -0.1 +0.1 -0.3 -0.1
carbon source Glycerol (C) +1.2 +0.2 +0.1 -0.1 -0.2
carbon source Valeric (C) +1.1 -0.3 +0.2 -0.0 +0.3
carbon source 3-hydroxybutyric (C) +0.9 +0.1 +0.1 -0.3 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.2 -0.1 +0.2 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.2 +0.1 +0.1 +0.0 +0.1
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