Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01113 and H281DRAFT_01114 are separated by 60 nucleotidesH281DRAFT_01114 and H281DRAFT_01115 are separated by 101 nucleotidesH281DRAFT_01115 and H281DRAFT_01116 are separated by 34 nucleotidesH281DRAFT_01116 and H281DRAFT_01117 are separated by 138 nucleotides H281DRAFT_01113: H281DRAFT_01113 - deoxynucleoside transporter, ATPase component (from data), at 1,252,410 to 1,253,957 _01113 H281DRAFT_01114: H281DRAFT_01114 - deoxynucleoside transporter, substrate-binding component (from data), at 1,254,018 to 1,255,022 _01114 H281DRAFT_01115: H281DRAFT_01115 - deoxynucleoside transporter, permease component 1 (from data), at 1,255,124 to 1,256,197 _01115 H281DRAFT_01116: H281DRAFT_01116 - deoxyribose kinase (EC 2.7.1.15) (from data), at 1,256,232 to 1,257,194 _01116 H281DRAFT_01117: H281DRAFT_01117 - acetaldehyde dehydrogenase (EC 1.2.1.3) (from data), at 1,257,333 to 1,259,720 _01117
Group Condition H281DRAFT_01113 H281DRAFT_01114 H281DRAFT_01115 H281DRAFT_01116 H281DRAFT_01117
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -2.7 -3.5 -6.5 -2.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -2.0 -2.8 -3.4 -3.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.8 -2.5 -2.9 -3.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -1.6 -3.4 -2.4 -2.5
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -2.1 -2.5 -2.4 -1.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -1.9 -2.1 -1.8 -2.0
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -1.4 -2.5 -1.9 -1.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -1.9 -1.9 -1.8 -1.8
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +1.1 +1.2 -2.8 -2.9
carbon source 2-Deoxy-D-Ribose (C) N.D. +1.9 +2.4 -3.5 -4.0
carbon source 2-Deoxy-D-Ribose (C) N.D. +1.9 +2.0 -3.4 -3.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +1.0 +0.9 -2.6 -2.4
carbon source 2-Deoxy-D-Ribose (C) N.D. +1.1 +1.5 -2.8 -2.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.6 -0.7 -0.7 -0.9
carbon source D-Glucose 20 mM (C) N.D. -0.5 -0.7 -0.3 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.1 -0.7 -0.3 -0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.3 +0.3 -0.8 -1.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.4 -0.6 +0.3 -0.8
carbon source Dodecandioic (C) N.D. -1.1 -0.6 -0.3 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.5 +0.5 -0.9 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.5 +0.1 -0.2 -1.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. -0.6 -0.6 +0.6 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.5 +0.3 -0.6 -0.8
carbon source 2-Deoxy-D-Ribose (C) N.D. +1.5 +1.9 -2.0 -1.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. +0.3 -0.4 +0.5 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.1 -0.6 +0.8 -0.1
phage Bu1_100 N.D. -1.6 +0.4 +0.4 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.7 +0.5 -0.6 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. +0.0 -0.6 +0.9 -0.2
carbon source adipate (C) N.D. +0.7 -0.5 -0.1 +0.5
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