Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01077 and H281DRAFT_01078 overlap by 4 nucleotidesH281DRAFT_01078 and H281DRAFT_01079 are separated by 26 nucleotidesH281DRAFT_01079 and H281DRAFT_01080 are separated by 1050 nucleotidesH281DRAFT_01080 and H281DRAFT_01081 are separated by 60 nucleotides H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612 _01077 H281DRAFT_01078: H281DRAFT_01078 - dihydroxycyclohexadiene carboxylate dehydrogenase, at 1,210,609 to 1,211,385 _01078 H281DRAFT_01079: H281DRAFT_01079 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 1,211,412 to 1,211,810 _01079 H281DRAFT_01080: H281DRAFT_01080 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 1,212,861 to 1,213,631 _01080 H281DRAFT_01081: H281DRAFT_01081 - L-glutamine synthetase, at 1,213,692 to 1,215,026 _01081
Group Condition H281DRAFT_01077 H281DRAFT_01078 H281DRAFT_01079 H281DRAFT_01080 H281DRAFT_01081
carbon source Hexanoic (C) -0.6 -0.5 +0.0 N.D. -1.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.1 -1.0 -0.4 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.0 -0.1 N.D. -0.4
carbon source 2-Deoxy-D-Ribose (C) -0.3 -1.9 +0.2 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.6 -0.0 N.D. -0.8
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.7 -0.9 -0.1 N.D. -0.2
carbon source Sebacic (C) -0.2 -1.3 -0.2 N.D. -0.2
carbon source Malonic (C) -0.1 -1.0 -0.3 N.D. -0.5
carbon source acetate (C) +0.0 -0.7 -0.4 N.D. -0.6
carbon source 2'-Deoxyinosine 5 mM (C) -0.7 -0.7 -0.2 N.D. -0.2
carbon source Gallic Acid (C) -0.7 -0.6 +0.3 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -1.2 +0.2 N.D. +0.0
carbon source propionate (C) -0.2 -1.0 -0.0 N.D. -0.4
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.9 +0.2 N.D. -0.7
phage Bu1_100 -0.5 -1.4 -0.0 N.D. +0.4
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.8 -0.5 -0.2 N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.9 -0.6 -0.0 N.D. +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.2 -0.9 -0.2 N.D. +0.3
carbon source D-Glucose (C) -0.2 -1.1 +0.3 N.D. +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 -0.6 -0.3 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.8 +0.3 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.1 +0.3 N.D. +0.4
carbon source 2-Deoxy-D-Ribose (C) -0.4 -0.6 +0.3 N.D. +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -0.8 +0.1 N.D. +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.5 -0.3 N.D. +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.7 +0.4 +0.1 N.D. +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.6 +0.5 -0.1 N.D. +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 -0.6 +0.0 N.D. +0.9
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.6 +0.6 +0.0 N.D. +0.5
phage Bu1_10 +0.3 +1.1 +0.5 N.D. -0.4
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