Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_01075 and H281DRAFT_01076 overlap by 4 nucleotidesH281DRAFT_01076 and H281DRAFT_01077 are separated by 39 nucleotidesH281DRAFT_01077 and H281DRAFT_01078 overlap by 4 nucleotidesH281DRAFT_01078 and H281DRAFT_01079 are separated by 26 nucleotides H281DRAFT_01075: H281DRAFT_01075 - benzoate 1,2-dioxygenase, alpha subunit, at 1,207,707 to 1,209,065 _01075 H281DRAFT_01076: H281DRAFT_01076 - benzoate/toluate 1,2-dioxygenase beta subunit, at 1,209,062 to 1,209,550 _01076 H281DRAFT_01077: H281DRAFT_01077 - benzoate/toluate 1,2-dioxygenase reductase subunit, at 1,209,590 to 1,210,612 _01077 H281DRAFT_01078: H281DRAFT_01078 - dihydroxycyclohexadiene carboxylate dehydrogenase, at 1,210,609 to 1,211,385 _01078 H281DRAFT_01079: H281DRAFT_01079 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 1,211,412 to 1,211,810 _01079
Group Condition H281DRAFT_01075 H281DRAFT_01076 H281DRAFT_01077 H281DRAFT_01078 H281DRAFT_01079
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 N.D. -1.1 -1.0 -0.4
carbon source 2-Deoxy-D-Ribose (C) -0.3 N.D. -0.3 -1.9 +0.2
phage Bu1_100 -0.2 N.D. -0.5 -1.4 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.6 N.D. -0.8 -0.5 -0.2
carbon source Sebacic (C) -0.3 N.D. -0.2 -1.3 -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 N.D. -0.7 -0.9 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.5 N.D. -0.2 -0.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -0.7 -1.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. -0.5 -0.6 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 N.D. -0.7 -0.5 +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 N.D. -0.5 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.7 -1.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. -0.2 -1.1 +0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 N.D. -0.5 -0.8 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.4 N.D. +0.1 -0.8 -0.2
carbon source D-Glucose (C) -0.1 N.D. -0.2 -1.1 +0.3
carbon source Gallic Acid (C) -0.1 N.D. -0.7 -0.6 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 N.D. -0.7 -0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -0.6 -0.8 +0.3
carbon source Malonic (C) +0.5 N.D. -0.1 -1.0 -0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.9 N.D. -0.7 -0.7 -0.2
carbon source Hexanoic (C) +0.6 N.D. -0.6 -0.5 +0.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. -0.2 -0.9 +0.2
carbon source Malonic (C) +0.7 N.D. +0.4 -0.8 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.7 N.D. +0.3 -0.8 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.9 N.D. +0.1 -0.5 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.0 N.D. +0.1 -0.6 +0.0
carbon source butyrate (C) +0.4 N.D. +0.3 +0.6 -0.3
carbon source D-Glucose (C) +0.7 N.D. +0.3 +0.3 -0.3
phage Bu1_10 +0.6 N.D. +0.3 +1.1 +0.5
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