Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00974 and H281DRAFT_00975 are separated by 58 nucleotidesH281DRAFT_00975 and H281DRAFT_00976 are separated by 112 nucleotidesH281DRAFT_00976 and H281DRAFT_00977 are separated by 232 nucleotidesH281DRAFT_00977 and H281DRAFT_00978 are separated by 366 nucleotides H281DRAFT_00974: H281DRAFT_00974 - L-alanine-DL-glutamate epimerase, at 1,091,841 to 1,093,058 _00974 H281DRAFT_00975: H281DRAFT_00975 - choline dehydrogenase, at 1,093,117 to 1,094,778 _00975 H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826 _00976 H281DRAFT_00977: H281DRAFT_00977 - hypothetical protein, at 1,096,059 to 1,096,424 _00977 H281DRAFT_00978: H281DRAFT_00978 - glutathione S-transferase, at 1,096,791 to 1,097,267 _00978
Group Condition H281DRAFT_00974 H281DRAFT_00975 H281DRAFT_00976 H281DRAFT_00977 H281DRAFT_00978
carbon source Azelaic (C) +0.3 -0.1 -1.0 -2.0 +0.2
carbon source Malonic (C) -0.1 -0.6 -0.7 -0.8 -0.0
phage Bu1_100 -0.0 +0.2 +0.2 -1.4 -0.9
carbon source Valeric (C) -0.3 -0.3 -1.0 +0.3 -0.5
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +0.2 -0.3 -1.7 -0.0
carbon source acetate (C) -0.1 +0.0 -0.4 -0.6 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 -0.0 -1.1 -0.2 -0.2
carbon source Protocatechuic Acid (C) -0.2 -0.2 -0.9 +0.3 -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.4 -0.1 -1.0 -0.2 -0.2
carbon source succinate (C) -0.7 -0.2 -0.6 +0.3 +0.2
carbon source p-Coumaric (C) -0.1 -0.2 +0.5 -1.0 -0.2
carbon source Sebacic (C) -0.7 -0.3 +0.4 -0.4 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.3 -0.9 +0.4 -0.6
carbon source propionate (C) +0.5 -0.1 -0.7 -0.3 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.4 -1.0 -0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.4 -0.6 -0.3 +0.2
carbon source adipate (C) +0.4 +0.2 +0.1 -0.7 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.4 +0.3 -0.3 -0.7 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 +0.3 -0.6 -0.7 +0.2
carbon source D-Glucose 20 mM (C) +0.3 +0.4 -0.2 -0.5 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 +0.5 -0.6 -0.1
carbon source Dodecandioic (C) +0.2 +0.0 -0.6 +0.6 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.1 +0.3 -1.0 +0.5 +0.3
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 -0.2 +0.5 -0.5 +0.2
ecofab LB in EcoFAB_3.5mL +0.1 +0.4 -0.4 +0.3 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.1 +0.5 -0.6 +0.2
carbon source Gallic Acid (C) -0.0 -0.2 -0.4 +0.9 +0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 +0.4 -0.6 +0.5 +0.4
carbon source D-Glucose 20 mM (C) +0.5 +0.4 -0.4 +0.4 +0.3
phage Bu1_100 -0.2 +0.1 +0.3 +0.5 +0.4
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