Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00942 and H281DRAFT_00943 are separated by 107 nucleotidesH281DRAFT_00943 and H281DRAFT_00944 are separated by 670 nucleotidesH281DRAFT_00944 and H281DRAFT_00945 are separated by 29 nucleotidesH281DRAFT_00945 and H281DRAFT_00946 are separated by 56 nucleotides H281DRAFT_00942: H281DRAFT_00942 - Transposase, at 1,045,965 to 1,047,359 _00942 H281DRAFT_00943: H281DRAFT_00943 - mannose-6-phosphate isomerase, type 2, at 1,047,467 to 1,049,056 _00943 H281DRAFT_00944: H281DRAFT_00944 - putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase, at 1,049,727 to 1,051,124 _00944 H281DRAFT_00945: H281DRAFT_00945 - UDP-glucose dehydrogenase, at 1,051,154 to 1,052,602 _00945 H281DRAFT_00946: H281DRAFT_00946 - protein-tyrosine phosphatase, at 1,052,659 to 1,053,114 _00946
Group Condition H281DRAFT_00942 H281DRAFT_00943 H281DRAFT_00944 H281DRAFT_00945 H281DRAFT_00946
carbon source Hexanoic (C) -0.6 -0.2 +0.1 -0.0 -1.2
carbon source Sebacic (C) -0.4 -0.2 +0.1 -0.3 -1.0
carbon source Dodecandioic (C) -0.3 -0.3 +0.3 +0.2 -1.2
phage Bu1_100 -0.3 -0.7 -0.1 -0.5 +0.5
carbon source Valeric (C) +0.2 -0.8 +0.3 +0.0 -0.9
carbon source Azelaic (C) -0.2 -0.4 +0.2 +0.2 -1.0
carbon source adipate (C) -0.1 -0.5 +0.1 +0.2 -0.6
carbon source acetate (C) -0.1 -0.3 -0.0 +0.2 -0.6
carbon source butyrate (C) -0.1 -0.4 +0.2 +0.2 -0.7
phage Bu1_10 -0.6 +0.4 +0.5 -0.8 +0.0
carbon source Protocatechuic Acid (C) -0.3 +0.4 +0.2 -0.0 -0.7
phage Bu1_100 -0.6 -0.1 +0.4 -0.2 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 -0.3 -0.2 -0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.6 +0.1 -0.1 +0.3 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 +0.3 -0.1 +0.3 -0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.9 +0.4 -0.2 -0.2 -0.3
carbon source Hexanoic (C) -0.1 +0.3 +0.5 +0.3 -0.3
carbon source 2'-Deoxyinosine 10 mM (C) -0.3 +0.1 +0.3 +0.1 +1.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 -0.1 +0.3 +0.1 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -0.3 +0.4 +0.0 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 -0.2 -0.0 +0.2 +0.9
carbon source Protocatechuic Acid (C) -0.0 +0.1 +0.2 +0.2 +0.8
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -0.2 +0.6 +0.2 +0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.4 +0.1 +0.1 +0.2 +0.6
ecofab LB in EcoFAB_3.5mL +0.5 -0.1 +0.1 -0.1 +1.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 +0.1 +0.5 +0.2 +0.9
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.3 +0.5 +0.1 +0.4 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.5 -0.1 +0.4 +0.2 +0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 +0.3 +0.3 +0.3 +0.7
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.1 +0.2 +0.5 +0.9
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