Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00911 and H281DRAFT_00912 are separated by 1 nucleotidesH281DRAFT_00912 and H281DRAFT_00913 are separated by 388 nucleotidesH281DRAFT_00913 and H281DRAFT_00914 are separated by 49 nucleotidesH281DRAFT_00914 and H281DRAFT_00915 are separated by 245 nucleotides H281DRAFT_00911: H281DRAFT_00911 - transcriptional regulator, BolA protein family, at 1,013,442 to 1,013,753 _00911 H281DRAFT_00912: H281DRAFT_00912 - intracellular septation protein, at 1,013,755 to 1,014,285 _00912 H281DRAFT_00913: H281DRAFT_00913 - peptide-methionine (R)-S-oxide reductase, at 1,014,674 to 1,015,096 _00913 H281DRAFT_00914: H281DRAFT_00914 - Uncharacterized conserved protein YdiU, UPF0061 family, at 1,015,146 to 1,016,702 _00914 H281DRAFT_00915: H281DRAFT_00915 - fatty-acyl-CoA synthase, at 1,016,948 to 1,018,633 _00915
Group Condition H281DRAFT_00911 H281DRAFT_00912 H281DRAFT_00913 H281DRAFT_00914 H281DRAFT_00915
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.2 N.D. -0.9 -0.3 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 N.D. -1.0 -0.3 +0.1
carbon source Sebacic (C) -1.2 N.D. +0.0 +0.4 -0.6
carbon source Protocatechuic Acid (C) -1.1 N.D. -0.1 +0.0 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 N.D. -0.4 -0.3 -0.3
ecofab LB in EcoFAB_3.5mL -0.4 N.D. -0.5 -0.1 +0.0
carbon source 2-Deoxy-D-Ribose (C) -0.3 N.D. -0.5 -0.3 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 N.D. -0.3 -0.2 +0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. -0.1 +0.2 -0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.4 N.D. -0.4 +0.0 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 N.D. -0.2 -0.2 +0.3
carbon source Hexanoic (C) -0.4 N.D. -0.3 +0.9 -0.7
carbon source 2-Deoxy-D-Ribose (C) -0.0 N.D. -0.2 -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. +0.3 -0.4 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 N.D. -0.5 +0.2 +0.2
phage Bu1_100 +0.4 N.D. -0.4 +0.0 -0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.4 N.D. +0.1 -0.2 +0.4
carbon source Azelaic (C) -0.0 N.D. -0.2 +0.6 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 N.D. -0.3 -0.2 -0.0
carbon source 2-Deoxy-D-Ribose (C) +0.2 N.D. -0.3 -0.2 +0.3
carbon source butyrate (C) +0.6 N.D. -0.7 +0.2 -0.0
control NoPhageControl -0.4 N.D. +0.3 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. +0.3 +0.1 +0.2
carbon source 2-Deoxy-D-Ribose (C) +0.5 N.D. -0.2 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. +0.4 +0.1 +0.1
carbon source D-Glucose (C) +0.6 N.D. -0.1 -0.3 +0.1
carbon source Hexanoic (C) +0.4 N.D. -0.4 +1.0 -0.6
carbon source 3-Hydroxypropionate (C) +0.3 N.D. +0.5 +0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.7 -0.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.5 N.D. +0.4 +0.0 -0.0
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