Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00904 and H281DRAFT_00905 are separated by 1 nucleotidesH281DRAFT_00905 and H281DRAFT_00906 are separated by 152 nucleotidesH281DRAFT_00906 and H281DRAFT_00907 are separated by 432 nucleotidesH281DRAFT_00907 and H281DRAFT_00908 are separated by 101 nucleotides H281DRAFT_00904: H281DRAFT_00904 - (3S)-malyl-CoA thioesterase, at 1,001,406 to 1,002,032 _00904 H281DRAFT_00905: H281DRAFT_00905 - putative ABC transport system ATP-binding protein, at 1,002,034 to 1,002,810 _00905 H281DRAFT_00906: H281DRAFT_00906 - glucose-6-phosphate isomerase, at 1,002,963 to 1,004,585 _00906 H281DRAFT_00907: H281DRAFT_00907 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 1,005,018 to 1,006,616 _00907 H281DRAFT_00908: H281DRAFT_00908 - D-amino-acid dehydrogenase, at 1,006,718 to 1,008,016 _00908
Group Condition H281DRAFT_00904 H281DRAFT_00905 H281DRAFT_00906 H281DRAFT_00907 H281DRAFT_00908
carbon source Phenylacetic (C) -0.1 -0.1 N.D. -0.8 -0.6
carbon source propionate (C) -0.1 +0.1 N.D. -0.1 -1.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 +0.0 N.D. -0.6 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.2 N.D. -0.4 -1.2
carbon source D,L-Lactate (C) -0.0 -0.5 N.D. -0.1 -0.5
carbon source Protocatechuic Acid (C) +0.1 +0.1 N.D. -0.6 -0.7
lb LB -0.0 -0.1 N.D. -0.3 -0.7
carbon source Malonic (C) -0.2 +0.3 N.D. -0.2 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.0 N.D. -0.4 -1.0
carbon source D-Glucose (C) +0.0 +0.2 N.D. -0.3 -0.8
carbon source 2-Deoxy-D-Ribose (C) -0.3 +0.1 N.D. -0.1 -0.6
carbon source Gallic Acid (C) +0.3 +0.1 N.D. -0.0 -1.2
carbon source 3-hydroxybutyric (C) -0.1 +0.2 N.D. -0.1 -0.7
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 -0.3 N.D. +0.2 -0.4
carbon source propionate (C) -0.1 +0.4 N.D. -0.1 -0.8
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.0 -0.0 N.D. +0.3 -0.8
carbon source Sebacic (C) +0.1 +0.1 N.D. +0.2 -0.8
phage Bu1_100 +0.1 +0.2 N.D. -0.8 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 +0.3 N.D. +0.2 -0.7
carbon source Suberic (C) +0.1 +0.3 N.D. +0.1 -0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 +0.3 N.D. +0.3 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.2 +0.3 N.D. -0.3 +0.3
carbon source adipate (C) -0.2 +0.1 N.D. -0.5 +0.7
carbon source Protocatechuic Acid (C) +0.2 +0.4 N.D. -0.2 -0.2
carbon source adipate (C) +0.2 +0.8 N.D. -0.4 -0.3
carbon source 3-Hydroxypropionate (C) -0.2 -0.2 N.D. +0.3 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.1 -0.3 N.D. +0.0 +0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.0 +0.3 N.D. +0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.6 N.D. -0.0 +0.4
phage Bu1_100 -0.1 +0.6 N.D. +0.3 +0.3
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