Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00900 and H281DRAFT_00901 are separated by 56 nucleotidesH281DRAFT_00901 and H281DRAFT_00902 are separated by 83 nucleotidesH281DRAFT_00902 and H281DRAFT_00903 are separated by 215 nucleotidesH281DRAFT_00903 and H281DRAFT_00904 are separated by 117 nucleotides H281DRAFT_00900: H281DRAFT_00900 - tRNA_Val_TAC, at 998,502 to 998,577 _00900 H281DRAFT_00901: H281DRAFT_00901 - tRNA_Asp_GTC, at 998,634 to 998,710 _00901 H281DRAFT_00902: H281DRAFT_00902 - peptidyl-prolyl cis-trans isomerase D, at 998,794 to 1,000,731 _00902 H281DRAFT_00903: H281DRAFT_00903 - hypothetical protein, at 1,000,947 to 1,001,288 _00903 H281DRAFT_00904: H281DRAFT_00904 - (3S)-malyl-CoA thioesterase, at 1,001,406 to 1,002,032 _00904
Group Condition H281DRAFT_00900 H281DRAFT_00901 H281DRAFT_00902 H281DRAFT_00903 H281DRAFT_00904
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.1 -0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.9 -0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.0 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.1 +0.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 +0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.0 -0.0 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -1.9 +0.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.9 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.1 -0.3 -0.1
phage Bu1_100 N.D. N.D. -1.5 +0.1 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -2.0 +0.3 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. -1.0 -0.4 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -1.4 -0.1 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. -0.9 -0.3 +0.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.8 -0.2 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. N.D. -0.8 -0.3 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -1.3 -0.0 +0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.0 -0.0 +0.0
carbon source D-Glucose (C) N.D. N.D. -1.1 +0.1 +0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -0.6 -0.3 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -1.3 +0.2 +0.1
control NoPhageControl N.D. N.D. -0.9 +0.0 +0.1
lb LB N.D. N.D. -0.9 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.1 +0.3 +0.1
carbon source D,L-Lactate (C) N.D. N.D. -0.9 +0.3 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. +1.3 -0.2 -0.1
carbon source Sebacic (C) N.D. N.D. +0.7 +0.2 +0.1
carbon source Valeric (C) N.D. N.D. +0.8 +0.1 +0.1
carbon source adipate (C) N.D. N.D. +1.1 -0.0 +0.2
carbon source Azelaic (C) N.D. N.D. +0.4 +0.6 +0.2
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