Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00886 and H281DRAFT_00887 are separated by 1010 nucleotidesH281DRAFT_00887 and H281DRAFT_00888 are separated by 70 nucleotidesH281DRAFT_00888 and H281DRAFT_00889 are separated by 217 nucleotidesH281DRAFT_00889 and H281DRAFT_00890 are separated by 78 nucleotides H281DRAFT_00886: H281DRAFT_00886 - two component transcriptional regulator, winged helix family, at 981,941 to 982,675 _00886 H281DRAFT_00887: H281DRAFT_00887 - Uncharacterized conserved protein, DUF1501 family, at 983,686 to 984,849 _00887 H281DRAFT_00888: H281DRAFT_00888 - phytoene synthase, at 984,920 to 985,756 _00888 H281DRAFT_00889: H281DRAFT_00889 - tRNA_Leu_TAG, at 985,974 to 986,060 _00889 H281DRAFT_00890: H281DRAFT_00890 - hypothetical protein, at 986,139 to 986,426 _00890
Group Condition H281DRAFT_00886 H281DRAFT_00887 H281DRAFT_00888 H281DRAFT_00889 H281DRAFT_00890
phage Bu1_10 -4.5 +0.1 -1.9 N.D. N.D.
phage Bu1_100 -5.3 +0.3 -1.1 N.D. N.D.
phage Bu1_100 -3.7 +0.3 -2.2 N.D. N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 +0.0 -2.8 N.D. N.D.
carbon source Malonic (C) -1.2 -0.1 -2.8 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.8 +0.0 -2.2 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 -0.2 -3.1 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) -4.2 +0.3 +0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.3 +0.2 -1.1 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.2 +0.2 -2.0 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.9 -0.2 -1.8 N.D. N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 +0.0 -1.3 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -3.8 +0.2 +0.9 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -2.1 +0.1 -0.6 N.D. N.D.
control NoPhageControl -0.5 -0.0 -1.9 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 -0.2 -1.6 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -2.8 +0.1 +0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 +0.1 -0.1 N.D. N.D.
carbon source Protocatechuic Acid (C) -1.1 +0.1 -1.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 +0.1 -0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.6 +0.1 -0.6 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -3.0 +0.0 +1.0 N.D. N.D.
carbon source Hexanoic (C) -2.0 -0.3 +0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -2.6 +0.3 +1.0 N.D. N.D.
carbon source Phenylacetic (C) -1.9 -0.0 +0.9 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -1.5 +0.0 +0.7 N.D. N.D.
carbon source Phenylacetic (C) -1.9 +0.0 +1.2 N.D. N.D.
carbon source Dodecandioic (C) -1.4 -0.1 +1.0 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -1.0 +0.0 +1.2 N.D. N.D.
ecofab LB in EcoFAB_3.5mL +3.1 +0.0 +0.6 N.D. N.D.
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