Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00884 and H281DRAFT_00885 are separated by 220 nucleotidesH281DRAFT_00885 and H281DRAFT_00886 are separated by 47 nucleotidesH281DRAFT_00886 and H281DRAFT_00887 are separated by 1010 nucleotidesH281DRAFT_00887 and H281DRAFT_00888 are separated by 70 nucleotides H281DRAFT_00884: H281DRAFT_00884 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 979,775 to 980,323 _00884 H281DRAFT_00885: H281DRAFT_00885 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 980,544 to 981,893 _00885 H281DRAFT_00886: H281DRAFT_00886 - two component transcriptional regulator, winged helix family, at 981,941 to 982,675 _00886 H281DRAFT_00887: H281DRAFT_00887 - Uncharacterized conserved protein, DUF1501 family, at 983,686 to 984,849 _00887 H281DRAFT_00888: H281DRAFT_00888 - phytoene synthase, at 984,920 to 985,756 _00888
Group Condition H281DRAFT_00884 H281DRAFT_00885 H281DRAFT_00886 H281DRAFT_00887 H281DRAFT_00888
phage Bu1_10 +0.0 +1.5 -4.5 +0.1 -1.9
phage Bu1_100 -0.1 +1.6 -5.3 +0.3 -1.1
control NoPhageControl -0.2 -1.2 -0.5 -0.0 -1.9
carbon source Malonic (C) +0.0 +0.3 -1.2 -0.1 -2.8
phage Bu1_100 +0.0 +1.9 -3.7 +0.3 -2.2
carbon source Sebacic (C) +0.2 -1.7 -1.9 -0.1 +0.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -0.4 -0.9 -0.2 -1.8
carbon source 2-Deoxy-D-Ribose (C) -0.0 -1.8 -1.4 +0.1 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.5 -0.3 -0.2 -3.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +1.6 -1.6 +0.0 -2.8
carbon source Dodecandioic (C) -0.0 -1.9 -1.4 -0.1 +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 +1.0 -1.2 +0.2 -2.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +1.7 -1.8 +0.0 -2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.4 -2.3 +0.2 -1.1
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +1.8 -1.5 +0.0 -1.3
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 +2.0 -3.8 +0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.4 -2.2 +0.1 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +1.8 -2.8 +0.1 +0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.0 +1.7 -3.0 +0.0 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +1.6 -1.6 +0.1 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +1.9 -0.8 -0.0 -1.0
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 +1.8 -2.6 +0.3 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +1.8 -1.5 +0.2 +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 +1.8 -1.6 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +2.4 -1.2 +0.1 -0.2
carbon source Phenylacetic (C) -0.4 +2.8 -1.9 -0.0 +0.9
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +5.3 -4.2 +0.3 +0.7
carbon source Phenylacetic (C) -0.1 +2.7 -1.9 +0.0 +1.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 +1.7 -1.0 +0.0 +1.2
ecofab LB in EcoFAB_3.5mL +0.2 -0.1 +3.1 +0.0 +0.6
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