Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00882 and H281DRAFT_00883 are separated by 112 nucleotidesH281DRAFT_00883 and H281DRAFT_00884 are separated by 74 nucleotidesH281DRAFT_00884 and H281DRAFT_00885 are separated by 220 nucleotidesH281DRAFT_00885 and H281DRAFT_00886 are separated by 47 nucleotides H281DRAFT_00882: H281DRAFT_00882 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 978,590 to 979,069 _00882 H281DRAFT_00883: H281DRAFT_00883 - alkyl hydroperoxide reductase subunit D, at 979,182 to 979,700 _00883 H281DRAFT_00884: H281DRAFT_00884 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 979,775 to 980,323 _00884 H281DRAFT_00885: H281DRAFT_00885 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 980,544 to 981,893 _00885 H281DRAFT_00886: H281DRAFT_00886 - two component transcriptional regulator, winged helix family, at 981,941 to 982,675 _00886
Group Condition H281DRAFT_00882 H281DRAFT_00883 H281DRAFT_00884 H281DRAFT_00885 H281DRAFT_00886
phage Bu1_100 N.D. +0.1 -0.1 +1.6 -5.3
carbon source Sebacic (C) N.D. +0.3 +0.2 -1.7 -1.9
carbon source Dodecandioic (C) N.D. +0.2 -0.0 -1.9 -1.4
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.2 -0.0 -1.8 -1.4
phage Bu1_10 N.D. +0.3 +0.0 +1.5 -4.5
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.0 +0.2 -1.7 -0.9
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.0 +0.1 -0.9 -1.5
phage Bu1_100 N.D. -0.2 +0.0 +1.9 -3.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.4 +0.1 -0.7 -1.8
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +0.2 +0.1 +2.0 -3.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 -0.3 +0.8 -1.6
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.1 +0.0 +1.7 -3.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.0 +0.1 +1.4 -2.3
carbon source 2'-Deoxyinosine 5 mM (C) N.D. +0.0 +0.1 +1.8 -2.8
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +0.0 +0.2 +1.8 -2.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.0 +0.3 +1.4 -2.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +0.0 -0.1 +1.1 -1.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.2 +0.2 +1.7 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 +0.2 +1.6 -1.6
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.0 +1.6 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.1 +1.8 -1.5
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.0 +1.8 -1.5
carbon source Phenylacetic (C) N.D. -0.0 -0.4 +2.8 -1.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.0 +0.2 +1.8 -1.6
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.0 -0.3 +5.3 -4.2
carbon source Phenylacetic (C) N.D. +0.1 -0.1 +2.7 -1.9
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. +0.1 +0.2 +1.7 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.0 -0.0 +2.4 -1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.0 +0.2 +1.9 -0.8
ecofab LB in EcoFAB_3.5mL N.D. +0.0 +0.2 -0.1 +3.1
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