Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00860 and H281DRAFT_00861 are separated by 321 nucleotidesH281DRAFT_00861 and H281DRAFT_00862 are separated by 161 nucleotidesH281DRAFT_00862 and H281DRAFT_00863 overlap by 4 nucleotidesH281DRAFT_00863 and H281DRAFT_00864 overlap by 4 nucleotides H281DRAFT_00860: H281DRAFT_00860 - phosphoserine phosphatase, at 951,225 to 952,064 _00860 H281DRAFT_00861: H281DRAFT_00861 - hypothetical protein, at 952,386 to 953,630 _00861 H281DRAFT_00862: H281DRAFT_00862 - DNA end-binding protein Ku, at 953,792 to 954,820 _00862 H281DRAFT_00863: H281DRAFT_00863 - hypothetical protein, at 954,817 to 954,963 _00863 H281DRAFT_00864: H281DRAFT_00864 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 954,960 to 957,980 _00864
Group Condition H281DRAFT_00860 H281DRAFT_00861 H281DRAFT_00862 H281DRAFT_00863 H281DRAFT_00864
carbon source 2'-Deoxyinosine 10 mM (C) -4.2 -0.4 -0.1 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -4.4 -0.3 -0.0 N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -3.9 -0.6 +0.0 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -4.2 -0.3 -0.0 N.D. -0.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -4.3 -0.0 +0.0 N.D. -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -4.2 -0.2 -0.0 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -4.3 -0.1 +0.2 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) -3.8 -0.4 -0.1 N.D. -0.0
carbon source 3-hydroxybutyric (C) -4.2 +0.1 -0.2 N.D. -0.1
carbon source D-Glucose 20 mM (C) -4.2 -0.4 +0.2 N.D. +0.1
carbon source 2'-Deoxyinosine 10 mM (C) -4.2 -0.1 -0.1 N.D. +0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -4.3 +0.0 +0.0 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -4.4 +0.2 +0.1 N.D. +0.0
carbon source Glycerol (C) -4.0 -0.2 +0.3 N.D. -0.3
carbon source succinate (C) -4.0 -0.1 +0.3 N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -4.4 +0.3 +0.3 N.D. -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -4.1 +0.0 +0.1 N.D. +0.1
carbon source D-Galactose (C) -4.1 +0.3 -0.1 N.D. +0.1
carbon source p-Coumaric (C) -4.0 -0.0 +0.2 N.D. +0.2
carbon source succinate (C) -4.0 +0.1 +0.1 N.D. +0.2
carbon source Malonic (C) -4.0 +0.3 +0.1 N.D. +0.0
carbon source Protocatechuic Acid (C) -4.0 +0.2 +0.2 N.D. +0.1
carbon source Dodecandioic (C) -3.9 +0.4 -0.1 N.D. +0.0
carbon source Protocatechuic Acid (C) -4.1 +0.4 +0.2 N.D. +0.0
carbon source acetate (C) -3.9 +0.3 +0.2 N.D. +0.0
carbon source acetate (C) -3.9 +0.4 +0.2 N.D. +0.0
carbon source Valeric (C) -3.5 +0.3 +0.2 N.D. -0.3
carbon source 4-Methyl-2-oxopentanoic (C) -4.1 +0.4 +0.4 N.D. +0.1
carbon source D-Galactose (C) -3.7 +0.6 +0.0 N.D. -0.1
carbon source Protocatechuic Acid (C) -3.6 +0.6 +0.1 N.D. +0.1
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