Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00846 and H281DRAFT_00847 are separated by 130 nucleotidesH281DRAFT_00847 and H281DRAFT_00848 are separated by 38 nucleotidesH281DRAFT_00848 and H281DRAFT_00849 overlap by 4 nucleotidesH281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotides H281DRAFT_00846: H281DRAFT_00846 - 23S rRNA m(5)U-1939 methyltransferase, at 935,026 to 936,456 _00846 H281DRAFT_00847: H281DRAFT_00847 - Beta-barrel assembly machine subunit BamD, at 936,587 to 937,447 _00847 H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763 _00848 H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620 _00849 H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306 _00850
Group Condition H281DRAFT_00846 H281DRAFT_00847 H281DRAFT_00848 H281DRAFT_00849 H281DRAFT_00850
carbon source Hexanoic (C) +0.2 N.D. -2.4 -1.0 N.D.
phage Bu1_10 -0.4 N.D. -1.4 -0.9 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 N.D. -2.6 +0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 N.D. -2.6 +0.1 N.D.
lb LB -0.1 N.D. -2.0 -0.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.0 N.D. -2.2 +0.0 N.D.
carbon source propionate (C) -0.2 N.D. -0.6 -1.1 N.D.
phage Bu1_100 +0.1 N.D. -1.1 -0.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.0 N.D. -1.6 -0.2 N.D.
carbon source Hexanoic (C) +0.2 N.D. -1.7 -0.3 N.D.
ecofab LB in EcoFAB_3.5mL -0.5 N.D. -0.6 -0.7 N.D.
carbon source D-Glucose (C) -0.2 N.D. -1.2 -0.4 N.D.
carbon source D-Glucose (C) -0.1 N.D. -1.4 -0.3 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 N.D. -1.6 +0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.0 N.D. -1.7 +0.1 N.D.
carbon source Protocatechuic Acid (C) +0.1 N.D. -1.7 +0.0 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 N.D. -1.2 -0.5 N.D.
carbon source Protocatechuic Acid (C) +0.2 N.D. -1.5 -0.2 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.1 N.D. -1.8 +0.2 N.D.
carbon source Phenylacetic (C) +0.1 N.D. -2.0 +0.6 N.D.
carbon source Malonic (C) -0.1 N.D. -1.5 +0.3 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.2 N.D. -1.3 +0.3 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.4 N.D. -2.2 +0.9 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.3 N.D. -1.4 +0.2 N.D.
phage Bu1_100 -0.2 N.D. +0.7 -0.9 N.D.
carbon source Phenylacetic (C) +0.2 N.D. -0.9 +0.8 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 N.D. +1.5 -0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.6 N.D. +1.9 -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +1.5 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. +1.8 +0.2 N.D.
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