Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00818 and H281DRAFT_00819 are separated by 210 nucleotidesH281DRAFT_00819 and H281DRAFT_00820 are separated by 322 nucleotidesH281DRAFT_00820 and H281DRAFT_00821 overlap by 49 nucleotidesH281DRAFT_00821 and H281DRAFT_00822 are separated by 123 nucleotides H281DRAFT_00818: H281DRAFT_00818 - Uncharacterized protein conserved in bacteria, at 908,189 to 908,617 _00818 H281DRAFT_00819: H281DRAFT_00819 - competence protein ComEA, at 908,828 to 909,439 _00819 H281DRAFT_00820: H281DRAFT_00820 - DNA-binding transcriptional regulator, MerR family, at 909,762 to 910,268 _00820 H281DRAFT_00821: H281DRAFT_00821 - 4-carboxymuconolactone decarboxylase, at 910,220 to 910,657 _00821 H281DRAFT_00822: H281DRAFT_00822 - multidrug resistance protein, MATE family, at 910,781 to 912,160 _00822
Group Condition H281DRAFT_00818 H281DRAFT_00819 H281DRAFT_00820 H281DRAFT_00821 H281DRAFT_00822
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -1.9 +0.0 -0.3 +0.0
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -1.6 -0.1 -0.5 -0.0
carbon source Hexanoic (C) N.D. -2.0 +0.1 -0.4 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -1.0 -0.4 -0.6 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -1.8 +0.0 -0.4 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.3 -0.2 -0.5 -0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -1.8 -0.4 +0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -1.3 -0.2 -0.3 +0.0
carbon source D-Glucose 20 mM (C) N.D. -1.2 -0.0 -0.5 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -1.3 +0.1 -0.2 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. -1.0 +0.3 -0.3 -0.3
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.9 -0.5 +0.4 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.5 -1.0 +0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.2 +0.9 +0.2 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.9 +0.6 +0.2 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +1.5 -0.7 -0.2 -0.2
carbon source Malonic (C) N.D. +1.2 +0.0 -0.5 -0.2
carbon source propionate (C) N.D. +1.1 +0.3 -0.5 -0.1
phage Bu1_100 N.D. +1.4 -0.5 +0.2 -0.0
phage Bu1_100 N.D. +1.6 -0.0 -0.3 -0.1
carbon source Valeric (C) N.D. +0.9 +0.7 -0.4 +0.2
carbon source adipate (C) N.D. +0.7 +0.6 +0.1 -0.1
carbon source adipate (C) N.D. +1.4 +0.6 -0.4 -0.2
carbon source D-Glucose (C) N.D. +1.3 -0.3 +0.4 +0.2
carbon source Sebacic (C) N.D. +1.5 +0.5 -0.3 -0.0
carbon source Hexanoic (C) N.D. +1.0 +0.6 -0.0 +0.2
carbon source Protocatechuic Acid (C) N.D. +1.7 +0.3 +0.0 -0.2
carbon source butyrate (C) N.D. +1.8 +0.4 -0.2 -0.0
carbon source Azelaic (C) N.D. +1.3 +0.5 +0.5 +0.0
carbon source succinate (C) N.D. +2.1 +0.3 +0.1 -0.2
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