Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00688 and H281DRAFT_00689 are separated by 216 nucleotidesH281DRAFT_00689 and H281DRAFT_00690 are separated by 132 nucleotidesH281DRAFT_00690 and H281DRAFT_00691 are separated by 33 nucleotidesH281DRAFT_00691 and H281DRAFT_00692 are separated by 84 nucleotides H281DRAFT_00688: H281DRAFT_00688 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 769,747 to 771,585 _00688 H281DRAFT_00689: H281DRAFT_00689 - transcriptional regulator, AraC family, at 771,802 to 772,686 _00689 H281DRAFT_00690: H281DRAFT_00690 - NADPH:quinone reductase, at 772,819 to 773,781 _00690 H281DRAFT_00691: H281DRAFT_00691 - XapX domain-containing protein, at 773,815 to 773,991 _00691 H281DRAFT_00692: H281DRAFT_00692 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 774,076 to 774,234 _00692
Group Condition H281DRAFT_00688 H281DRAFT_00689 H281DRAFT_00690 H281DRAFT_00691 H281DRAFT_00692
carbon source 2'-Deoxyinosine 10 mM (C) -0.3 N.D. -1.5 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.8 -0.6 N.D.
ecofab LB in EcoFAB_3.5mL -0.2 N.D. -1.5 +0.2 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.1 N.D. -1.3 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. -0.7 -0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 N.D. -0.2 -0.8 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 N.D. -0.6 -0.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 N.D. -0.9 -0.3 N.D.
carbon source butyrate (C) -0.1 N.D. -0.2 -0.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.1 N.D. -0.6 -0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 N.D. +0.2 -0.6 N.D.
carbon source Azelaic (C) +0.4 N.D. -1.3 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -0.3 +0.3 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. -0.7 +0.3 N.D.
carbon source D-Glucose (C) +0.4 N.D. -0.6 -0.1 N.D.
phage Bu1_100 +0.5 N.D. -0.3 -0.2 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 N.D. +0.2 -0.5 N.D.
carbon source Malonic (C) +0.5 N.D. +0.1 -0.3 N.D.
carbon source Protocatechuic Acid (C) -0.1 N.D. +0.7 -0.2 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 N.D. +0.9 -0.1 N.D.
phage Bu1_10 +0.6 N.D. +0.6 -0.5 N.D.
carbon source Sebacic (C) -0.1 N.D. +0.8 +0.1 N.D.
carbon source Malonic (C) +0.3 N.D. +0.8 -0.3 N.D.
carbon source Hexanoic (C) +0.7 N.D. -0.1 +0.2 N.D.
carbon source Valeric (C) +0.5 N.D. +0.8 -0.3 N.D.
carbon source propionate (C) +0.1 N.D. +0.7 +0.1 N.D.
carbon source Pimelic (C) +0.5 N.D. +0.8 -0.0 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 N.D. +0.8 +0.3 N.D.
carbon source Phenylacetic (C) +0.1 N.D. +0.7 +0.4 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.3 N.D. +0.7 +0.3 N.D.
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