Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00606 and H281DRAFT_00607 are separated by 81 nucleotidesH281DRAFT_00607 and H281DRAFT_00608 are separated by 120 nucleotidesH281DRAFT_00608 and H281DRAFT_00609 are separated by 30 nucleotidesH281DRAFT_00609 and H281DRAFT_00610 are separated by 469 nucleotides H281DRAFT_00606: H281DRAFT_00606 - 23S rRNA pseudouridine2604 synthase, at 679,478 to 680,209 _00606 H281DRAFT_00607: H281DRAFT_00607 - hypothetical protein, at 680,291 to 681,580 _00607 H281DRAFT_00608: H281DRAFT_00608 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 681,701 to 684,280 _00608 H281DRAFT_00609: H281DRAFT_00609 - methionine aminopeptidase, type I, at 684,311 to 685,120 _00609 H281DRAFT_00610: H281DRAFT_00610 - SSU ribosomal protein S2P, at 685,590 to 686,342 _00610
Group Condition H281DRAFT_00606 H281DRAFT_00607 H281DRAFT_00608 H281DRAFT_00609 H281DRAFT_00610
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 N.D. -3.6 -0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 N.D. -3.5 +0.1 N.D.
carbon source Phenylacetic (C) -0.2 N.D. -3.1 -0.1 N.D.
carbon source Phenylacetic (C) -0.1 N.D. -2.6 -0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.1 N.D. -3.4 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -2.4 -0.2 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. -2.2 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -2.2 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -2.4 -0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -2.1 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -2.1 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -2.3 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.7 -0.1 N.D.
carbon source Malonic (C) -0.2 N.D. -1.7 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.6 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -1.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.5 +0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.1 N.D. -1.7 +0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 N.D. -1.6 +0.1 N.D.
carbon source D-Glucose (C) -0.2 N.D. -1.2 -0.2 N.D.
carbon source Malonic (C) -0.3 N.D. -1.0 -0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.2 N.D. -1.4 +0.1 N.D.
carbon source Malonic (C) +0.1 N.D. -1.2 -0.3 N.D.
carbon source D-Glucose (C) +0.1 N.D. -1.3 -0.1 N.D.
carbon source propionate (C) +0.1 N.D. -1.0 -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 N.D. -1.3 +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 N.D. -1.3 +0.4 N.D.
carbon source D-Glucose 20 mM (C) +0.2 N.D. -1.2 -0.2 N.D.
carbon source D-Glucose (C) +0.4 N.D. -0.9 -0.2 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 N.D. +0.7 +0.8 N.D.
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