Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00506 and H281DRAFT_00507 are separated by 6 nucleotidesH281DRAFT_00507 and H281DRAFT_00508 are separated by 17 nucleotidesH281DRAFT_00508 and H281DRAFT_00509 are separated by 43 nucleotidesH281DRAFT_00509 and H281DRAFT_00510 are separated by 124 nucleotides H281DRAFT_00506: H281DRAFT_00506 - Zn-dependent protease (includes SpoIVFB), at 567,138 to 567,800 _00506 H281DRAFT_00507: H281DRAFT_00507 - tryptophanyl-tRNA synthetase, at 567,807 to 569,009 _00507 H281DRAFT_00508: H281DRAFT_00508 - Methyltransferase domain-containing protein, at 569,027 to 569,623 _00508 H281DRAFT_00509: H281DRAFT_00509 - dihydrodipicolinate synthase, at 569,667 to 570,593 _00509 H281DRAFT_00510: H281DRAFT_00510 - Beta-barrel assembly machine subunit BamC, at 570,718 to 571,857 _00510
Group Condition H281DRAFT_00506 H281DRAFT_00507 H281DRAFT_00508 H281DRAFT_00509 H281DRAFT_00510
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -2.1 N.D. -0.4 N.D. -1.4
carbon source butyrate (C) -3.2 N.D. -0.6 N.D. -0.0
carbon source Protocatechuic Acid (C) -2.8 N.D. +0.1 N.D. -0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.6 N.D. -0.6 N.D. -1.6
control NoPhageControl -1.8 N.D. +0.1 N.D. -0.7
carbon source Protocatechuic Acid (C) -2.3 N.D. -0.0 N.D. +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.6 N.D. -0.0 N.D. -0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. +0.2 N.D. -1.1
carbon source Phenylacetic (C) -0.9 N.D. -0.0 N.D. -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -1.3 N.D. +0.0 N.D. -0.4
carbon source 2-Deoxy-D-Ribose 20 mM (C) -1.7 N.D. +0.3 N.D. -0.2
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -0.1 N.D. -1.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 N.D. +0.1 N.D. -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.0 N.D. -0.0 N.D. -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. +0.2 N.D. -0.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.8 N.D. +0.1 N.D. -0.5
ecofab LB in EcoFAB_3.5mL -0.4 N.D. +0.6 N.D. -1.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 N.D. +0.4 N.D. -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 N.D. -0.2 N.D. -1.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.9 N.D. -0.3 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.9 N.D. -0.1 N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.5 N.D. +0.6 N.D. -0.6
carbon source Hexanoic (C) +0.9 N.D. -0.4 N.D. -1.0
carbon source adipate (C) +0.7 N.D. -0.5 N.D. -0.4
carbon source Malonic (C) +1.3 N.D. -0.3 N.D. -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 N.D. +0.1 N.D. +1.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 N.D. +0.2 N.D. +1.3
carbon source acetate (C) +1.7 N.D. -0.3 N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +2.6 N.D. +0.1 N.D. -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +2.3 N.D. +0.4 N.D. -0.4
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