Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00382 and H281DRAFT_00383 are separated by 22 nucleotidesH281DRAFT_00383 and H281DRAFT_00384 overlap by 1 nucleotidesH281DRAFT_00384 and H281DRAFT_00385 are separated by 125 nucleotidesH281DRAFT_00385 and H281DRAFT_00386 are separated by 302 nucleotides H281DRAFT_00382: H281DRAFT_00382 - amino acid ABC transporter substrate-binding protein, PAAT family, at 422,785 to 423,567 _00382 H281DRAFT_00383: H281DRAFT_00383 - amino acid ABC transporter membrane protein, PAAT family, at 423,590 to 424,267 _00383 H281DRAFT_00384: H281DRAFT_00384 - amino acid ABC transporter ATP-binding protein, PAAT family, at 424,267 to 425,034 _00384 H281DRAFT_00385: H281DRAFT_00385 - 2-isopropylmalate synthase, at 425,160 to 426,878 _00385 H281DRAFT_00386: H281DRAFT_00386 - hypothetical protein, at 427,181 to 427,687 _00386
Group Condition H281DRAFT_00382 H281DRAFT_00383 H281DRAFT_00384 H281DRAFT_00385 H281DRAFT_00386
carbon source 2-Deoxy-D-Ribose (C) -0.8 -0.5 -0.8 -0.7 +0.1
carbon source 3-Hydroxypropionate (C) +0.1 +0.0 +0.2 -3.3 +0.3
carbon source adipate (C) -0.6 -0.9 +0.3 +0.4 -1.9
carbon source 2-Deoxy-D-Ribose (C) -0.9 -0.2 -0.1 -0.5 -0.8
carbon source Protocatechuic Acid (C) -0.1 -0.3 -0.1 -1.5 -0.4
carbon source D-Glucose (C) -0.7 -0.6 +0.1 -0.8 -0.2
carbon source Protocatechuic Acid (C) +0.2 -0.0 -0.0 -1.9 -0.3
carbon source 3-Hydroxypropionate (C) +0.5 -0.1 +0.2 -2.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.6 -0.3 -0.3 -0.1
carbon source Azelaic (C) -2.3 -0.6 +0.4 +0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.8 -0.1 -0.1 -0.9
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.7 -0.4 -1.0 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +0.3 +0.6 -0.4 -1.7
carbon source Phenylacetic (C) -0.6 +0.3 -0.1 -0.5 -0.6
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 -0.0 -0.5 -0.5 -0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 +0.3 -0.0 -1.1 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.3 +0.6 -0.1 -1.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.0 +0.7 +0.0 -0.6 -1.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 +0.2 -0.4 +0.1 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.5 -0.4 -0.2 -0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.8 -0.2 +0.1 -0.2 -0.9
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.6 +0.3 -0.5 +0.5
carbon source adipate (C) -1.2 +0.2 +0.5 -0.2 +0.3
carbon source Valeric (C) -0.2 -0.7 +0.1 -0.1 +0.8
carbon source Hexanoic (C) +0.3 +0.1 -0.3 -0.8 +0.8
ecofab LB in EcoFAB_3.5mL +0.2 +0.4 +0.3 +0.4 -0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 +0.1 +0.1 -0.4 +1.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.3 -0.1 +0.7 -0.7 +1.1
phage Bu1_100 -0.1 -0.2 +0.7 +0.3 +1.1
phage Bu1_100 +0.7 +0.3 +0.9 -0.1 +0.6
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