Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00357 and H281DRAFT_00358 are separated by 217 nucleotidesH281DRAFT_00358 and H281DRAFT_00359 are separated by 167 nucleotidesH281DRAFT_00359 and H281DRAFT_00360 are separated by 12 nucleotidesH281DRAFT_00360 and H281DRAFT_00361 are separated by 46 nucleotides H281DRAFT_00357: H281DRAFT_00357 - transcriptional regulator, ArsR family, at 390,782 to 391,081 _00357 H281DRAFT_00358: H281DRAFT_00358 - Aldo/keto reductase, at 391,299 to 392,237 _00358 H281DRAFT_00359: H281DRAFT_00359 - Acyl-CoA dehydrogenase, at 392,405 to 393,535 _00359 H281DRAFT_00360: H281DRAFT_00360 - hypothetical protein, at 393,548 to 394,756 _00360 H281DRAFT_00361: H281DRAFT_00361 - (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain (from data), at 394,803 to 396,923 _00361
Group Condition H281DRAFT_00357 H281DRAFT_00358 H281DRAFT_00359 H281DRAFT_00360 H281DRAFT_00361
carbon source adipate (C) N.D. -0.2 -4.5 -4.5 -3.7
carbon source adipate (C) N.D. +0.4 -2.6 -4.0 -3.6
carbon source Sebacic (C) N.D. +0.0 -3.2 -2.0 -2.6
carbon source Dodecandioic (C) N.D. -0.3 -1.7 -1.3 -2.0
carbon source Phenylacetic (C) N.D. -0.3 -1.2 -0.9 -2.1
carbon source Phenylacetic (C) N.D. +0.2 -0.9 -0.9 -1.8
phage Bu1_100 N.D. +0.1 -1.5 -0.9 -0.5
phage Bu1_10 N.D. +0.2 -1.2 +0.4 -2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -1.4 -0.1 +0.3
carbon source 4-Methyl-2-oxopentanoic (C) N.D. -0.2 -0.9 -0.3 -0.2
carbon source Gallic Acid (C) N.D. -0.1 -0.8 -0.2 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.1 -0.9 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 -0.9 -0.4 +0.1
carbon source Valeric (C) N.D. -1.2 -0.3 +0.1 +0.0
carbon source Malonic (C) N.D. -0.4 -1.2 +0.3 +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -0.3 +0.3 -0.4 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 -0.5 -0.4 +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. -0.3 -0.7 -0.3 +0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. -0.1 +0.5 -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -0.6 -0.2 +0.6
ecofab LB in EcoFAB_3.5mL N.D. -0.5 +0.7 -0.3 -0.2
carbon source D-Glucose 20 mM (C) N.D. +0.2 +0.4 -0.3 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.5 +0.6 -0.5 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.1 +0.9 -0.2 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.3 +1.3 -0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.5 +0.6 -0.5 -0.0
carbon source 2-Deoxy-D-Ribose (C) N.D. +0.5 +0.4 -0.3 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.2 +0.7 -0.2 +0.4
carbon source Azelaic (C) N.D. -0.2 +1.1 +0.4 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +0.1 +1.1 +0.2 -0.2
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