Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00319 and H281DRAFT_00320 are separated by 273 nucleotidesH281DRAFT_00320 and H281DRAFT_00321 are separated by 223 nucleotidesH281DRAFT_00321 and H281DRAFT_00322 are separated by 118 nucleotidesH281DRAFT_00322 and H281DRAFT_00323 are separated by 87 nucleotides H281DRAFT_00319: H281DRAFT_00319 - recombination associated protein RdgC, at 348,006 to 348,929 _00319 H281DRAFT_00320: H281DRAFT_00320 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 349,203 to 349,667 _00320 H281DRAFT_00321: H281DRAFT_00321 - Cell wall-associated hydrolase, NlpC family, at 349,891 to 351,606 _00321 H281DRAFT_00322: H281DRAFT_00322 - molybdenum-pterin binding domain-containing protein, at 351,725 to 352,150 _00322 H281DRAFT_00323: H281DRAFT_00323 - GAF domain-containing protein, at 352,238 to 352,738 _00323
Group Condition H281DRAFT_00319 H281DRAFT_00320 H281DRAFT_00321 H281DRAFT_00322 H281DRAFT_00323
carbon source Hexanoic (C) -0.7 -0.1 -0.3 N.D. -1.1
phage Bu1_10 -0.2 -0.4 +0.4 N.D. -1.6
carbon source adipate (C) -0.3 +0.4 -0.5 N.D. -1.0
carbon source Azelaic (C) -0.5 -0.5 -0.2 N.D. -0.2
phage Bu1_100 -0.1 -0.9 +0.1 N.D. -0.5
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -1.6 -0.0 N.D. +0.3
carbon source D-Glucose (C) -0.1 -0.6 -0.3 N.D. +0.3
carbon source D-Glucose (C) +0.3 -0.2 -0.2 N.D. -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.2 -0.6 -0.2 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.7 +0.4 -0.3 N.D. +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 -0.3 -0.1 N.D. +0.5
carbon source Sebacic (C) +0.4 +0.1 -0.4 N.D. -0.4
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 -0.4 +0.1 N.D. +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -0.4 +0.5 N.D. +0.1
carbon source p-Coumaric (C) +0.1 -0.6 +0.3 N.D. +0.1
carbon source 2-Deoxy-D-Ribose (C) +0.4 -0.5 -0.0 N.D. +0.2
carbon source Malonic (C) +0.6 +0.6 -0.9 N.D. -0.2
carbon source Pimelic (C) +0.0 +0.6 -0.2 N.D. -0.3
carbon source Valeric (C) +0.3 +0.4 -0.1 N.D. -0.4
carbon source Glycerol (C) -0.3 +0.6 +0.1 N.D. -0.2
carbon source butyrate (C) +0.3 -0.2 -0.2 N.D. +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.4 -1.0 +0.0 N.D. +1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 -0.5 +0.3 N.D. +0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 -0.2 +0.0 N.D. +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 -0.4 +0.1 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.0 +0.6 N.D. +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 -0.1 +0.5 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.0 -0.1 +0.2 N.D. +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.8 +0.3 N.D. +0.0
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.4 +0.2 N.D. +0.4
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