Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00296 and H281DRAFT_00297 are separated by 180 nucleotidesH281DRAFT_00297 and H281DRAFT_00298 are separated by 195 nucleotidesH281DRAFT_00298 and H281DRAFT_00299 are separated by 264 nucleotidesH281DRAFT_00299 and H281DRAFT_00300 are separated by 275 nucleotides H281DRAFT_00296: H281DRAFT_00296 - poly(3-hydroxybutyrate) depolymerase, at 315,763 to 317,040 _00296 H281DRAFT_00297: H281DRAFT_00297 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 317,221 to 319,143 _00297 H281DRAFT_00298: H281DRAFT_00298 - hypothetical protein, at 319,339 to 319,584 _00298 H281DRAFT_00299: H281DRAFT_00299 - Protein of unknown function (DUF3096), at 319,849 to 320,001 _00299 H281DRAFT_00300: H281DRAFT_00300 - 6-phosphogluconolactonase, at 320,277 to 321,581 _00300
Group Condition H281DRAFT_00296 H281DRAFT_00297 H281DRAFT_00298 H281DRAFT_00299 H281DRAFT_00300
carbon source 4-Hydroxybenzoic Acid (C) -0.9 -1.6 -1.1 -0.4 +0.4
control NoPhageControl +0.0 -0.2 -1.9 -0.2 +0.0
carbon source Gallic Acid (C) -0.4 -0.0 -1.5 -0.0 -0.1
carbon source Phenylacetic (C) +0.0 -1.0 -0.4 -0.4 +0.0
carbon source Hexanoic (C) -0.9 +0.0 -1.0 +0.0 -0.0
carbon source Phenylacetic (C) -0.3 -0.9 -0.5 -0.1 +0.1
carbon source Protocatechuic Acid (C) -1.2 -0.6 +0.5 -0.2 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -1.0 -0.5 -0.0 +0.1 +0.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 -0.3 -0.9 -0.0 -0.2
carbon source adipate (C) -0.7 -0.4 +0.3 -0.4 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.1 +0.1 -1.3 +0.0 +0.0
carbon source Protocatechuic Acid (C) -0.9 -0.5 +0.2 +0.1 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.9 -0.5 +0.4 -0.0 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.4 +0.1 -0.8 -0.0 -0.4
phage Bu1_10 -0.2 +0.1 -0.8 -0.2 +0.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 -0.3 +0.9 +0.1 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 -0.3 +1.2 -0.1 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 -0.4 +1.0 +0.1 +0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.5 -0.1 +0.9 -0.0 +0.0
carbon source Valeric (C) -0.4 +0.1 +0.9 -0.1 -0.0
carbon source 2'-Deoxyinosine 10 mM (C) -0.6 -0.3 +1.4 -0.1 +0.1
carbon source butyrate (C) -0.2 +0.1 +1.1 -0.1 +0.1
carbon source Malonic (C) -0.1 -0.3 +1.2 +0.1 +0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.0 -0.1 +1.1 -0.1 +0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -0.1 +1.3 +0.1 +0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 +0.0 +1.0 +0.2 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 -0.1 +1.2 +0.0 -0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.2 -0.1 +1.5 +0.0 +0.1
carbon source Malonic (C) +0.6 +0.1 +0.7 -0.1 +0.1
carbon source succinate (C) +0.4 +0.2 +1.3 +0.1 +0.2
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