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Protein
Homologs
Fitness for 5 genes in
Paraburkholderia bryophila 376MFSha3.1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
H281DRAFT_00234 and H281DRAFT_00235 overlap by 4 nucleotides
H281DRAFT_00235 and H281DRAFT_00236 are separated by 238 nucleotides
H281DRAFT_00236 and H281DRAFT_00237 are separated by 307 nucleotides
H281DRAFT_00237 and H281DRAFT_00238 are separated by 206 nucleotides
H281DRAFT_00234: H281DRAFT_00234 - hypothetical protein, at 254,816 to 255,358
_00234
H281DRAFT_00235: H281DRAFT_00235 - hypothetical protein, at 255,355 to 255,969
_00235
H281DRAFT_00236: H281DRAFT_00236 - sigma54 specific transcriptional regulator, Fis family, at 256,208 to 257,266
_00236
H281DRAFT_00237: H281DRAFT_00237 - Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family, at 257,574 to 257,891
_00237
H281DRAFT_00238: H281DRAFT_00238 - hypothetical protein, at 258,098 to 258,361
_00238
Group
Condition
H281DRAFT
_00234
H281DRAFT
_00235
H281DRAFT
_00236
H281DRAFT
_00237
H281DRAFT
_00238
phage
Bu1_10
-0.4
-0.4
-1.4
N.D.
N.D.
phage
Bu1_100
-0.4
+0.4
-1.7
N.D.
N.D.
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
-0.3
-0.7
-0.5
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.3
-0.8
-0.3
N.D.
N.D.
carbon source
succinate (C)
-0.2
-1.1
+0.4
N.D.
N.D.
carbon source
D-Glucose (C)
+0.2
-1.1
+0.1
N.D.
N.D.
ecofab
LB in EcoFAB_3.5mL
-0.3
-1.2
+0.8
N.D.
N.D.
phage
Bu1_100
+0.4
+0.4
-1.1
N.D.
N.D.
carbon source
Sebacic (C)
+0.1
-1.2
+0.9
N.D.
N.D.
carbon source
2'-Deoxyinosine 5 mM (C)
-0.7
+0.6
+0.5
N.D.
N.D.
carbon source
Pimelic (C)
-0.2
-0.4
+0.9
N.D.
N.D.
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
-0.5
+0.2
+0.6
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
+0.9
N.D.
N.D.
carbon source
2-Deoxyadenosine 5-monophosphate 2.5 mM (C)
-0.3
+0.3
+0.7
N.D.
N.D.
carbon source
Hydroxy-L-Proline (C)
-0.2
-0.2
+1.2
N.D.
N.D.
carbon source
Hydroxy-L-Proline (C)
-0.3
+0.7
+0.5
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.2
+0.4
+0.7
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
-0.2
+0.5
+0.7
N.D.
N.D.
carbon source
Malonic (C)
+0.1
-0.0
+1.2
N.D.
N.D.
carbon source
Malonic (C)
+0.2
+0.3
+0.7
N.D.
N.D.
carbon source
3-Hydroxypropionate (C)
-0.2
+0.6
+0.9
N.D.
N.D.
carbon source
butyrate (C)
-0.5
+0.0
+1.8
N.D.
N.D.
carbon source
2-Deoxy-D-Ribose (C)
+0.1
+0.6
+0.7
N.D.
N.D.
carbon source
L-Glutamic (C)
+0.3
+0.6
+0.7
N.D.
N.D.
carbon source
Dodecandioic (C)
-0.4
+0.5
+1.5
N.D.
N.D.
carbon source
Suberic (C)
+0.3
+0.7
+0.9
N.D.
N.D.
carbon source
Azelaic (C)
+0.3
+0.8
+1.4
N.D.
N.D.
carbon source
butyrate (C)
+0.5
+0.1
+2.1
N.D.
N.D.
carbon source
adipate (C)
+0.2
-0.1
+2.6
N.D.
N.D.
carbon source
adipate (C)
+0.5
+0.3
+2.6
N.D.
N.D.
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