Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00217 and H281DRAFT_00218 are separated by 156 nucleotidesH281DRAFT_00218 and H281DRAFT_00219 are separated by 148 nucleotidesH281DRAFT_00219 and H281DRAFT_00220 are separated by 231 nucleotidesH281DRAFT_00220 and H281DRAFT_00221 are separated by 617 nucleotides H281DRAFT_00217: H281DRAFT_00217 - hypothetical protein, at 235,564 to 236,733 _00217 H281DRAFT_00218: H281DRAFT_00218 - NAD+ synthase (glutamine-hydrolysing), at 236,890 to 238,635 _00218 H281DRAFT_00219: H281DRAFT_00219 - nitrogen regulatory protein P-II family, at 238,784 to 239,122 _00219 H281DRAFT_00220: H281DRAFT_00220 - Outer membrane protein (porin), at 239,354 to 240,475 _00220 H281DRAFT_00221: H281DRAFT_00221 - amino acid ABC transporter ATP-binding protein, PAAT family, at 241,093 to 241,872 _00221
Group Condition H281DRAFT_00217 H281DRAFT_00218 H281DRAFT_00219 H281DRAFT_00220 H281DRAFT_00221
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 -0.2 -0.6 -2.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.6 -0.5 -1.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -1.0 -0.4 -1.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 +0.1 -0.5 -1.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.7 -0.1 -1.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.6 -0.2 -1.0 N.D.
carbon source Protocatechuic Acid (C) -0.3 -0.2 -1.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.9 -0.3 -0.7 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +0.0 -1.3 -0.9 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 -0.1 -0.7 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.6 -0.2 -1.0 N.D.
carbon source butyrate (C) -0.8 -0.3 -0.5 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 +0.0 -0.8 -0.9 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.5 -1.1 +0.0 -1.2 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -0.4 -0.4 -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.7 -0.7 -0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.0 -0.3 -1.4 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 -0.9 -0.6 +0.0 N.D.
carbon source succinate (C) -0.4 -0.3 -0.5 -0.2 N.D.
phage Bu1_10 -1.2 -0.4 -0.3 +0.5 N.D.
carbon source Dodecandioic (C) +0.1 -0.1 -0.5 -0.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 -0.4 +0.0 -1.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.8 +0.2 -0.7 N.D.
carbon source Hexanoic (C) -0.1 +0.3 -1.1 +0.0 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 -0.6 -0.5 +0.3 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 -0.8 -0.6 +0.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.4 +0.5 -1.1 +0.4 N.D.
carbon source adipate (C) -0.3 +0.2 -0.7 +0.4 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.5 +0.0 -0.8 +0.1 N.D.
carbon source Hydroxy-L-Proline (C) -0.2 +0.3 -0.5 +0.4 N.D.
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