Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00130 and H281DRAFT_00131 are separated by 203 nucleotidesH281DRAFT_00131 and H281DRAFT_00133 are separated by 426 nucleotidesH281DRAFT_00133 and H281DRAFT_00134 overlap by 4 nucleotidesH281DRAFT_00134 and H281DRAFT_00136 are separated by 590 nucleotides H281DRAFT_00130: H281DRAFT_00130 - Predicted secreted protein, at 137,932 to 138,660 _00130 H281DRAFT_00131: H281DRAFT_00131 - Predicted RNA-binding protein, contains PUA-like domain, at 138,864 to 139,322 _00131 H281DRAFT_00133: H281DRAFT_00133 - cell division protein ZapA, at 139,749 to 140,063 _00133 H281DRAFT_00134: H281DRAFT_00134 - hypothetical protein, at 140,060 to 140,416 _00134 H281DRAFT_00136: H281DRAFT_00136 - vitamin B12 transporter, at 141,007 to 142,932 _00136
Group Condition H281DRAFT_00130 H281DRAFT_00131 H281DRAFT_00133 H281DRAFT_00134 H281DRAFT_00136
phage Bu1_100 -0.9 +0.1 -1.1 N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.6 -0.4 -0.1 N.D. -0.4
carbon source 2-Deoxy-D-Ribose (C) -0.7 -0.2 -0.3 N.D. -0.1
carbon source butyrate (C) -0.7 -0.3 -0.2 N.D. +0.0
carbon source Dodecandioic (C) -0.9 -0.0 -0.2 N.D. -0.1
carbon source 3-Hydroxypropionate (C) -0.4 -0.1 -0.4 N.D. -0.2
carbon source Sebacic (C) -0.9 -0.0 +0.4 N.D. -0.5
carbon source Protocatechuic Acid (C) -0.7 -0.2 +0.3 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.2 +0.1 N.D. -0.6
carbon source adipate (C) -1.1 +0.1 +0.2 N.D. +0.0
phage Bu1_100 +0.7 -0.3 -1.5 N.D. +0.4
phage Bu1_10 +0.0 -0.0 -0.9 N.D. +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.8 -0.1 -0.4 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.0 +0.1 N.D. -0.5
ecofab LB in EcoFAB_3.5mL +0.6 -0.0 -0.4 N.D. -0.0
carbon source Hexanoic (C) +0.5 +0.2 -0.3 N.D. -0.1
carbon source Hydroxy-L-Proline (C) +0.8 -0.1 -0.4 N.D. +0.0
carbon source adipate (C) +0.7 -0.2 -0.0 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 -0.3 +0.6 N.D. -0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 -0.0 +0.4 N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.8 -0.2 +0.3 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.9 +0.0 +0.1 N.D. -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +1.0 -0.2 +0.2 N.D. -0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.9 +0.0 +0.2 N.D. -0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.6 +0.3 +0.2 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.7 -0.2 +0.6 N.D. -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.9 -0.3 +0.3 N.D. +0.2
carbon source Phenylacetic (C) +0.6 +0.0 +0.5 N.D. +0.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.4 +0.1 +0.5 N.D. +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 +0.2 +0.7 N.D. +0.0
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