Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00126 and H281DRAFT_00127 are separated by 155 nucleotidesH281DRAFT_00127 and H281DRAFT_00128 are separated by 131 nucleotidesH281DRAFT_00128 and H281DRAFT_00129 are separated by 113 nucleotidesH281DRAFT_00129 and H281DRAFT_00130 are separated by 88 nucleotides H281DRAFT_00126: H281DRAFT_00126 - cytochrome c, at 133,539 to 133,880 _00126 H281DRAFT_00127: H281DRAFT_00127 - dihydroxyacid dehydratase, at 134,036 to 135,709 _00127 H281DRAFT_00128: H281DRAFT_00128 - transcriptional regulator, LysR family, at 135,841 to 136,830 _00128 H281DRAFT_00129: H281DRAFT_00129 - phosphatidylglycerol:prolipoprotein diacylglycerol transferase, at 136,944 to 137,843 _00129 H281DRAFT_00130: H281DRAFT_00130 - Predicted secreted protein, at 137,932 to 138,660 _00130
Group Condition H281DRAFT_00126 H281DRAFT_00127 H281DRAFT_00128 H281DRAFT_00129 H281DRAFT_00130
phage Bu1_100 -0.2 -0.0 -0.4 N.D. -0.9
carbon source Sebacic (C) -0.5 -0.1 +0.1 N.D. -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.0 -0.7 N.D. -0.6
carbon source Dodecandioic (C) -0.3 -0.1 -0.0 N.D. -0.9
carbon source adipate (C) -0.3 +0.3 +0.2 N.D. -1.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 +0.0 -0.3 N.D. -0.5
carbon source Malonic (C) -0.4 +0.2 +0.3 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.0 -0.4 N.D. +0.4
carbon source Hydroxy-L-Proline (C) -0.2 -0.2 -0.3 N.D. +0.5
carbon source Protocatechuic Acid (C) -0.1 +0.4 +0.2 N.D. -0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.3 -0.2 -0.2 N.D. +0.8
carbon source Malonic (C) -0.2 +0.3 +0.4 N.D. -0.5
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.5 -0.0 +0.1 N.D. +0.4
carbon source L-Glutamic (C) +0.3 -0.1 -0.4 N.D. +0.3
carbon source Hydroxy-L-Proline (C) +0.1 -0.1 -0.5 N.D. +0.8
carbon source D-Glucose (C) -0.2 -0.1 +0.4 N.D. +0.3
carbon source butyrate (C) +0.2 +0.1 +0.8 N.D. -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 -0.0 -0.3 N.D. +1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 +0.2 +0.2 N.D. +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 +0.3 -0.3 N.D. +0.4
carbon source 2-furoic (C) +0.2 +0.0 -0.2 N.D. +0.7
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.2 +0.0 N.D. +0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 -0.1 +0.3 N.D. +0.6
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 +0.1 +0.3 N.D. +0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 -0.1 +0.4 N.D. +0.9
ecofab LB in EcoFAB_3.5mL -0.2 +0.2 +0.5 N.D. +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 +0.1 +0.3 N.D. +0.8
carbon source adipate (C) +0.3 +0.2 -0.1 N.D. +0.7
carbon source Hexanoic (C) +0.4 +0.3 +0.0 N.D. +0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.4 +0.0 N.D. +0.9
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