Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00121 and H281DRAFT_00122 are separated by 3 nucleotidesH281DRAFT_00122 and H281DRAFT_00123 are separated by 137 nucleotidesH281DRAFT_00123 and H281DRAFT_00124 are separated by 79 nucleotidesH281DRAFT_00124 and H281DRAFT_00125 are separated by 90 nucleotides H281DRAFT_00121: H281DRAFT_00121 - lipopolysaccharide export system permease protein, at 128,262 to 129,410 _00121 H281DRAFT_00122: H281DRAFT_00122 - lipopolysaccharide export system permease protein, at 129,414 to 130,511 _00122 H281DRAFT_00123: H281DRAFT_00123 - aminopeptidase A. Metallo peptidase. MEROPS family M17, at 130,649 to 132,160 _00123 H281DRAFT_00124: H281DRAFT_00124 - DNA polymerase III, chi subunit, at 132,240 to 132,656 _00124 H281DRAFT_00125: H281DRAFT_00125 - Protein of unknown function (DUF2486), at 132,747 to 133,460 _00125
Group Condition H281DRAFT_00121 H281DRAFT_00122 H281DRAFT_00123 H281DRAFT_00124 H281DRAFT_00125
carbon source butyrate (C) N.D. N.D. -2.8 N.D. +0.3
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -1.7 N.D. +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -1.4 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. -1.2 N.D. -0.5
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -1.6 N.D. +0.0
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -1.5 N.D. -0.0
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -1.2 N.D. -0.3
carbon source Malonic (C) N.D. N.D. -1.2 N.D. -0.1
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -1.7 N.D. +0.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -1.5 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. N.D. -0.9 N.D. -0.4
lb LB N.D. N.D. -1.0 N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -1.2 N.D. +0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -1.1 N.D. -0.1
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -1.1 N.D. -0.1
carbon source propionate (C) N.D. N.D. -1.2 N.D. +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. -0.5 N.D. -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.8 N.D. -0.2
carbon source Hydroxy-L-Proline (C) N.D. N.D. -1.0 N.D. +0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -1.1 N.D. +0.2
carbon source Protocatechuic Acid (C) N.D. N.D. -1.3 N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. -1.2 N.D. +0.4
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -1.3 N.D. +0.6
carbon source Glycerol (C) N.D. N.D. -0.8 N.D. +0.4
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.7 N.D. +0.3
carbon source acetate (C) N.D. N.D. -0.6 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 N.D. -0.6
carbon source Sebacic (C) N.D. N.D. -0.5 N.D. +0.5
phage Bu1_100 N.D. N.D. +0.8 N.D. -0.5
carbon source Hexanoic (C) N.D. N.D. -0.5 N.D. +0.8
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