Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00101 and H281DRAFT_00102 are separated by 59 nucleotidesH281DRAFT_00102 and H281DRAFT_00103 are separated by 348 nucleotidesH281DRAFT_00103 and H281DRAFT_00104 are separated by 3 nucleotidesH281DRAFT_00104 and H281DRAFT_00105 overlap by 20 nucleotides H281DRAFT_00101: H281DRAFT_00101 - Rhodanese-related sulfurtransferase, at 105,861 to 106,184 _00101 H281DRAFT_00102: H281DRAFT_00102 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 106,244 to 106,897 _00102 H281DRAFT_00103: H281DRAFT_00103 - transcriptional regulator, LacI family, at 107,246 to 108,334 _00103 H281DRAFT_00104: H281DRAFT_00104 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 108,338 to 109,825 _00104 H281DRAFT_00105: H281DRAFT_00105 - monosaccharide ABC transporter membrane protein, CUT2 family, at 109,806 to 110,819 _00105
Group Condition H281DRAFT_00101 H281DRAFT_00102 H281DRAFT_00103 H281DRAFT_00104 H281DRAFT_00105
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -1.3 -0.2 +0.2 -0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.4 -0.6 -0.6 -0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 -0.2 -0.5 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.8 -0.2 -0.6 +0.0
carbon source butyrate (C) N.D. -1.2 -0.1 -0.4 +0.1
carbon source Valeric (C) N.D. -1.0 +0.2 -0.2 -0.2
carbon source 2-Deoxy-D-Ribose (C) N.D. -0.9 -0.2 +0.0 -0.2
phage Bu1_100 N.D. -0.4 +0.3 -0.8 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.8 +0.1 -0.3 -0.2
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.1 -0.6 -0.5 -0.1
carbon source Protocatechuic Acid (C) N.D. -1.2 -0.1 +0.1 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.4 -0.6 -0.1 +0.2
carbon source propionate (C) N.D. -0.6 +0.3 -0.3 -0.2
carbon source Protocatechuic Acid (C) N.D. -0.8 +0.3 -0.2 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -1.1 +0.0 +0.6 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.9 +0.3 -0.2 +0.2
carbon source Hydroxy-L-Proline (C) N.D. -0.9 +0.4 -0.2 +0.3
carbon source Gallic Acid (C) N.D. -0.6 -0.1 -0.1 +0.5
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.6 +0.1 -0.3 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.4 -0.6 +0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. +0.6 -0.6 +0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. +0.8 -0.3 +0.1 -0.2
phage Bu1_10 N.D. +0.0 +0.0 -0.5 +0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. +0.9 +0.2 -0.0 -0.4
carbon source Malonic (C) N.D. +0.1 +0.7 -0.3 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +1.3 -0.6 +0.3 +0.1
carbon source adipate (C) N.D. +1.0 +0.2 -0.0 -0.2
carbon source D-Glucose (C) N.D. +0.8 -0.1 +0.4 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +1.4 -0.1 +0.2 -0.4
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. +0.9 -0.3 +0.3 +0.4
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