Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00088 and H281DRAFT_00089 are separated by 293 nucleotidesH281DRAFT_00089 and H281DRAFT_00090 are separated by 24 nucleotidesH281DRAFT_00090 and H281DRAFT_00091 are separated by 31 nucleotidesH281DRAFT_00091 and H281DRAFT_00092 overlap by 4 nucleotides H281DRAFT_00088: H281DRAFT_00088 - amino acid ABC transporter substrate-binding protein, PAAT family, at 88,948 to 89,751 _00088 H281DRAFT_00089: H281DRAFT_00089 - urease accessory protein, at 90,045 to 91,037 _00089 H281DRAFT_00090: H281DRAFT_00090 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 91,062 to 91,754 _00090 H281DRAFT_00091: H281DRAFT_00091 - urea transport system ATP-binding protein, at 91,786 to 92,649 _00091 H281DRAFT_00092: H281DRAFT_00092 - amino acid/amide ABC transporter membrane protein 2, HAAT family, at 92,646 to 93,851 _00092
Group Condition H281DRAFT_00088 H281DRAFT_00089 H281DRAFT_00090 H281DRAFT_00091 H281DRAFT_00092
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.2 -0.8 -1.2 +0.3 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.4 -0.4 -0.7 -0.5 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 -0.4 -0.9 -0.6 +0.1
carbon source Protocatechuic Acid (C) -0.2 -0.3 -0.2 -0.7 -0.1
carbon source Sebacic (C) +0.2 -0.4 -0.6 -0.7 +0.0
carbon source Malonic (C) +0.2 +0.2 -0.2 -1.7 +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 -0.5 -0.9 -0.1 +0.3
carbon source D-Glucose (C) +0.0 -0.8 -0.1 -0.6 +0.3
carbon source D-Glucose (C) -0.0 -0.6 -0.6 -0.2 +0.3
carbon source 3-Hydroxypropionate (C) -0.1 -0.5 -0.0 +0.3 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.3 +0.5 +0.0 -0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.3 +0.4 -0.7 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 -0.4 -0.8 -0.2 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.1 -0.2 -0.6 +0.3 -0.3
carbon source D,L-Lactate (C) -0.3 -0.5 -0.1 -0.2 +0.5
carbon source D-Glucose (C) -0.1 -0.4 +0.3 -0.5 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -0.4 -0.7 +0.2 -0.1
carbon source Hexanoic (C) -0.2 -1.1 -0.0 +0.3 +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 -0.1 -1.0 +0.6 -0.0
carbon source Valeric (C) -0.1 -0.4 -0.1 +0.9 -0.6
carbon source acetate (C) +0.2 -0.6 -0.6 +0.6 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.6 +0.2 +0.2 +0.4
carbon source L-Glutamic (C) +0.6 -0.2 +0.1 -0.5 -0.1
carbon source Azelaic (C) -0.2 +0.4 -1.0 +0.9 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.9 -0.4 -0.3 -0.1 +0.1
carbon source Malonic (C) +0.0 +0.3 +0.3 +0.5 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.6 +0.5 -0.4 +0.4 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.4 +0.2 +0.6 -0.4
phage Bu1_100 -0.2 -0.5 -0.0 +1.2 +0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.7 -0.3 +0.2 +0.5 +0.1
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