Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_00033 and H281DRAFT_00034 are separated by 676 nucleotidesH281DRAFT_00034 and H281DRAFT_00035 are separated by 547 nucleotidesH281DRAFT_00035 and H281DRAFT_00036 are separated by 549 nucleotidesH281DRAFT_00036 and H281DRAFT_00037 are separated by 916 nucleotides H281DRAFT_00033: H281DRAFT_00033 - IS66 C-terminal element, at 35,026 to 35,640 _00033 H281DRAFT_00034: H281DRAFT_00034 - hypothetical protein, at 36,317 to 36,478 _00034 H281DRAFT_00035: H281DRAFT_00035 - Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family, at 37,026 to 37,439 _00035 H281DRAFT_00036: H281DRAFT_00036 - DNA-binding winged helix-turn-helix (wHTH) domain-containing protein, at 37,989 to 40,754 _00036 H281DRAFT_00037: H281DRAFT_00037 - NAD(P)H dehydrogenase (quinone), at 41,671 to 42,525 _00037
Group Condition H281DRAFT_00033 H281DRAFT_00034 H281DRAFT_00035 H281DRAFT_00036 H281DRAFT_00037
carbon source Valeric (C) -0.7 N.D. -0.3 -0.1 +0.0
carbon source propionate (C) -0.6 N.D. -0.0 +0.0 -0.2
carbon source Phenylacetic (C) -0.2 N.D. -0.2 -0.0 -0.2
carbon source Protocatechuic Acid (C) -0.3 N.D. -0.1 +0.0 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.4 N.D. -0.2 -0.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.0 N.D. -0.6 +0.1 +0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.2 N.D. +0.1 -0.2 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.3 N.D. -0.2 +0.2 +0.0
carbon source Gallic Acid (C) +0.2 N.D. -0.4 +0.1 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 N.D. -0.3 -0.0 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.3 N.D. -0.3 -0.1 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 N.D. -0.4 +0.1 +0.2
carbon source Sebacic (C) +0.2 N.D. +0.2 -0.3 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.3 N.D. +0.4 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.2 -0.1 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 N.D. +0.3 -0.1 -0.2
carbon source adipate (C) -0.1 N.D. +0.4 -0.0 -0.2
phage Bu1_100 -0.4 N.D. +0.4 -0.0 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 N.D. -0.0 +0.3 -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 N.D. +0.2 -0.0 -0.3
carbon source butyrate (C) +0.5 N.D. -0.2 -0.1 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. +0.4 -0.2 +0.0
phage Bu1_100 +0.3 N.D. -0.2 +0.1 +0.2
phage Bu1_10 -0.2 N.D. -0.2 +0.3 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.5 N.D. +0.0 +0.0 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 N.D. +0.0 +0.1 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.6 N.D. -0.0 +0.0 +0.0
carbon source butyrate (C) +0.3 N.D. +0.3 -0.1 +0.0
carbon source acetate (C) +0.1 N.D. +0.3 +0.2 +0.1
ecofab LB in EcoFAB_3.5mL +0.5 N.D. +0.3 -0.0 +0.0
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