Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_4012 and Ga0059261_4013 are separated by 102 nucleotidesGa0059261_4013 and Ga0059261_4014 are separated by 105 nucleotidesGa0059261_4014 and Ga0059261_4015 are separated by 108 nucleotidesGa0059261_4015 and Ga0059261_4016 overlap by 4 nucleotides Ga0059261_4012: Ga0059261_4012 - AMP nucleosidase, at 4,127,325 to 4,128,776 _4012 Ga0059261_4013: Ga0059261_4013 - hypothetical protein, at 4,128,879 to 4,129,118 _4013 Ga0059261_4014: Ga0059261_4014 - Peroxiredoxin, at 4,129,224 to 4,129,703 _4014 Ga0059261_4015: Ga0059261_4015 - Putative transcriptional regulator, at 4,129,812 to 4,130,372 _4015 Ga0059261_4016: Ga0059261_4016 - Predicted transcriptional regulator, at 4,130,369 to 4,131,334 _4016
Group Condition Ga0059261_4012 Ga0059261_4013 Ga0059261_4014 Ga0059261_4015 Ga0059261_4016
motility inner cut, LB soft agar motility assay -1.6 -2.4 N.D. -0.2 +0.0
motility inner cut, LB soft agar motility assay -1.1 -1.6 N.D. -0.5 +0.0
motility inner cut, LB soft agar motility assay -0.3 -1.1 N.D. +0.0 -0.7
stress benzoic 0.29 mg/ml -2.3 +0.1 N.D. +0.1 -0.0
temperature LB 37C -1.9 -0.0 N.D. -0.0 -0.0
stress 1-ethyl-3-methylimidazolium chloride 5 mM -1.9 -0.2 N.D. -0.1 +0.2
carbon source D-Glucose (C) -1.0 -0.9 N.D. +0.1 -0.1
stress Choline chloride 40 mM -2.0 +0.2 N.D. +0.0 -0.1
stress Zinc 1.25 mM -1.5 -0.1 N.D. -0.1 -0.0
stress sodium fluoride 10 mM -1.6 +0.0 N.D. -0.1 +0.0
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -0.7 -1.0 N.D. +0.0 -0.0
pH LB, pH7 -0.5 -0.7 N.D. -0.2 -0.1
stress 1-ethyl-3-methylimidazolium acetate 20 mM -1.3 -0.3 N.D. -0.1 +0.1
stress Cobalt chloride 0.08 mM -1.1 -0.7 N.D. +0.2 +0.1
lb LB -1.1 -0.4 N.D. +0.2 -0.1
stress 1-ethyl-3-methylimidazolium chloride 10 mM -0.9 -0.6 N.D. +0.0 +0.1
temperature LB 37C -1.9 +0.5 N.D. +0.1 -0.1
pH LB, pH6 -1.3 +0.2 N.D. -0.3 +0.0
stress 5-Hydroxymethylfurfural 2.5 mM -1.0 -0.4 N.D. -0.0 +0.2
stress Chlorite 0.5 mM -1.2 -0.4 N.D. +0.3 -0.0
stress Cholin acetate 40 mM -1.6 +0.2 N.D. +0.1 +0.1
stress nitrite 10 mM -1.5 +0.2 N.D. +0.1 +0.1
motility outer cut, LB soft agar motility assay -1.3 +0.5 N.D. -0.1 -0.1
carbon source L-Glutamic (C) -1.3 +0.5 N.D. -0.1 +0.0
stress Vanillin 0.25 mM -1.3 +0.2 N.D. +0.2 +0.1
stress Tetracycline 0.002 mg/ml -1.3 +0.9 N.D. -0.0 -0.1
nitrogen source L-Glutamine (N) +1.3 -0.9 N.D. +0.1 -0.0
nutrient D-Glucose (C); no added vitamins +1.2 -1.0 N.D. +0.8 -0.0
nutrient D-Glucose (C); no added vitamins +1.2 -0.3 N.D. +0.7 +0.1
motility inner cut, LB soft agar motility assay -0.6 +2.8 N.D. +0.4 +0.2
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