Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3971 and Ga0059261_3972 are separated by 166 nucleotidesGa0059261_3972 and Ga0059261_3973 are separated by 112 nucleotidesGa0059261_3973 and Ga0059261_3974 are separated by 173 nucleotidesGa0059261_3974 and Ga0059261_3975 overlap by 4 nucleotides Ga0059261_3971: Ga0059261_3971 - Uncharacterized protein conserved in bacteria, at 4,086,592 to 4,087,023 _3971 Ga0059261_3972: Ga0059261_3972 - tRNA, at 4,087,190 to 4,087,266 _3972 Ga0059261_3973: Ga0059261_3973 - NADPH-dependent glutamate synthase beta chain and related oxidoreductases, at 4,087,379 to 4,088,677 _3973 Ga0059261_3974: Ga0059261_3974 - nicotinamide mononucleotide transporter PnuC, at 4,088,851 to 4,089,453 _3974 Ga0059261_3975: Ga0059261_3975 - Predicted ATPase/kinase involved in NAD metabolism, at 4,089,450 to 4,089,965 _3975
Group Condition Ga0059261_3971 Ga0059261_3972 Ga0059261_3973 Ga0059261_3974 Ga0059261_3975
motility inner cut, LB soft agar motility assay -3.3 N.D. -0.1 +0.4 +0.3
motility inner cut, LB soft agar motility assay -1.9 N.D. +0.4 +0.0 +0.1
lb LB -1.1 N.D. -0.2 +0.0 +0.1
stress nitrite 10 mM -1.0 N.D. -0.2 +0.1 +0.0
pH LB, pH6 -1.2 N.D. +0.1 +0.2 -0.1
motility inner cut, LB soft agar motility assay +0.0 N.D. +0.2 -0.2 -0.9
carbon source D-Glucose (C) -0.9 N.D. -0.1 -0.0 +0.2
temperature LB 20C -0.7 N.D. +0.1 -0.1 -0.1
pH LB, pH8 -0.7 N.D. +0.1 -0.0 -0.1
stress Thallium(I) acetate 0.01 mg/ml -0.5 N.D. -0.0 -0.1 +0.1
carbon source NAG (C) -0.8 N.D. +0.1 -0.0 +0.2
carbon source D-Raffinose (C) -0.6 N.D. -0.1 +0.0 +0.1
carbon source L-Glutamine (C) -0.5 N.D. -0.1 +0.0 +0.3
nitrogen source L-Glutamine (N) -0.6 N.D. +0.2 -0.0 +0.2
stress 1-ethyl-3-methylimidazolium chloride 5 mM +0.3 N.D. -0.2 -0.1 -0.3
temperature LB 37C -0.5 N.D. +0.3 +0.1 -0.0
pH LB, pH8 -0.7 N.D. +0.1 +0.2 +0.3
motility outer cut, LB soft agar motility assay -1.2 N.D. +0.6 +0.3 +0.3
pH LB, pH7 -0.4 N.D. +0.1 +0.3 +0.2
nitrogen source L-Proline (N) +0.7 N.D. +0.0 -0.1 -0.2
stress Gentamicin 0.015 mg/ml +0.5 N.D. -0.2 +0.2 -0.0
stress Cholin acetate 40 mM +0.8 N.D. -0.1 +0.0 -0.2
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.5 N.D. +0.0 +0.2 -0.1
stress Paraquat dichloride 0.035 mg/ml +0.7 N.D. +0.1 -0.1 -0.0
lb LB +0.8 N.D. -0.1 +0.1 +0.0
stress benzoic 0.29 mg/ml +0.7 N.D. +0.0 +0.1 +0.2
stress Choline Lysine 5 mM +0.9 N.D. +0.1 +0.0 -0.0
stress nitrite 5 mM +0.7 N.D. +0.1 +0.1 +0.1
nutrient D-Glucose (C); no added vitamins +0.6 N.D. +0.2 +0.2 +0.1
motility inner cut, LB soft agar motility assay +0.1 N.D. +0.6 -0.3 +1.1
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