Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3953 and Ga0059261_3954 are separated by 48 nucleotidesGa0059261_3954 and Ga0059261_3955 are separated by 2 nucleotidesGa0059261_3955 and Ga0059261_3956 are separated by 32 nucleotidesGa0059261_3956 and Ga0059261_3957 are separated by 2 nucleotides Ga0059261_3953: Ga0059261_3953 - Type II secretory pathway, component PulF, at 4,068,117 to 4,069,340 _3953 Ga0059261_3954: Ga0059261_3954 - Homoserine acetyltransferase, at 4,069,389 to 4,070,468 _3954 Ga0059261_3955: Ga0059261_3955 - hypothetical protein, at 4,070,471 to 4,071,235 _3955 Ga0059261_3956: Ga0059261_3956 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 4,071,268 to 4,072,233 _3956 Ga0059261_3957: Ga0059261_3957 - prepilin-type N-terminal cleavage/methylation domain, at 4,072,236 to 4,072,859 _3957
Group Condition Ga0059261_3953 Ga0059261_3954 Ga0059261_3955 Ga0059261_3956 Ga0059261_3957
nutrient D-Cellobiose (C); no added vitamins -1.2 -0.0 -0.9 -0.8 -1.0
nutrient D-Cellobiose (C); no added vitamins -1.2 +0.0 -0.4 -1.1 -1.1
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -1.0 -0.0 -0.9 -1.0 -0.9
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -0.8 +0.1 -1.0 -1.1 -0.9
nutrient D-Glucose (C); no added vitamins -0.8 +0.1 -0.9 -1.2 -0.7
nutrient D-Glucose (C); no added vitamins -0.8 +0.2 -0.7 -1.3 -0.7
stress nitrite 2.5 mM -0.4 -0.4 -0.5 -1.0 -0.1
stress Paraquat dichloride 0.035 mg/ml -0.6 -0.5 -0.4 -0.6 -0.2
stress Polymyxin B sulfate 0.1 mg/ml -0.4 -0.1 -0.6 -0.4 -0.6
carbon source NAG (C) -0.4 -0.2 -0.5 -0.4 -0.5
stress nitrite 5 mM -0.1 -0.1 -0.8 -0.8 -0.1
stress Cobalt chloride 0.04 mM -0.1 -0.1 -0.6 -0.9 -0.0
stress Polymyxin B sulfate 0.05 mg/ml -0.1 -0.2 -0.6 -0.6 -0.1
nutrient L-Glutamic (C); no added vitamins -0.5 -0.0 -0.3 -0.5 -0.2
nutrient L-Glutamic (C); no added vitamins -0.5 +0.1 -0.4 -0.4 -0.3
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins -0.3 +0.0 -0.4 -0.4 -0.3
stress perchlorate 25 mM +0.0 -0.1 -0.4 -0.7 -0.2
lb LB +0.1 -0.0 -0.6 -0.7 -0.1
lb LB -0.0 +0.0 -0.4 -0.9 +0.1
motility inner cut, LB soft agar motility assay -0.0 +0.5 -0.6 -0.1 +0.4
motility outer cut, LB soft agar motility assay +0.3 +0.1 +0.7 -0.4 -0.1
motility inner cut, LB soft agar motility assay +0.4 +0.4 -0.5 -0.1 +0.8
lb LB +0.4 +0.3 +0.2 -0.2 +0.3
stress Cephalothin 0.3 mg/ml +0.4 +0.2 +0.3 +0.1 +0.4
nitrogen source L-Glutamine (N) +0.5 +0.2 +0.3 +0.0 +0.5
motility outer cut, LB soft agar motility assay +0.0 +0.9 -0.3 +0.4 +0.6
stress D-Cycloserine 0.064 mg/ml +0.4 +0.3 +0.2 +0.1 +0.7
nitrogen source L-Proline (N) +0.5 +0.1 +0.2 +0.5 +0.7
nitrogen source L-Proline (N) +0.4 +0.2 +0.3 +0.3 +0.8
nitrogen source L-Glutamine (N) +0.6 +0.2 +0.2 +0.3 +0.9
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