Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3948 and Ga0059261_3949 are separated by 143 nucleotidesGa0059261_3949 and Ga0059261_3950 are separated by 54 nucleotidesGa0059261_3950 and Ga0059261_3951 overlap by 4 nucleotidesGa0059261_3951 and Ga0059261_3952 overlap by 4 nucleotides Ga0059261_3948: Ga0059261_3948 - type II secretion system protein H, at 4,063,942 to 4,064,376 _3948 Ga0059261_3949: Ga0059261_3949 - type II secretion system protein G, at 4,064,520 to 4,065,008 _3949 Ga0059261_3950: Ga0059261_3950 - Type II secretion system (T2SS), protein L, at 4,065,063 to 4,066,154 _3950 Ga0059261_3951: Ga0059261_3951 - Type II secretory pathway, component PulM, at 4,066,151 to 4,066,657 _3951 Ga0059261_3952: Ga0059261_3952 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 4,066,654 to 4,068,117 _3952
Group Condition Ga0059261_3948 Ga0059261_3949 Ga0059261_3950 Ga0059261_3951 Ga0059261_3952
nutrient D-Cellobiose (C); no added vitamins -1.5 -1.3 -1.2 -1.0 -1.0
nutrient D-Glucose (C); no added vitamins -1.6 -1.2 -1.0 -0.8 -1.0
nutrient D-Cellobiose (C); no added vitamins -0.5 -1.1 -1.3 -1.0 -1.3
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -1.3 -0.9 -1.0 -1.0 -1.0
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -0.3 -1.0 -1.1 -0.9 -0.9
nutrient D-Glucose (C); no added vitamins -0.3 -0.8 -1.2 -0.8 -0.7
stress Paraquat dichloride 0.035 mg/ml -0.6 -0.6 -0.7 -0.7 -0.5
stress nitrite 2.5 mM -1.1 -0.5 -0.4 -0.4 -0.6
nutrient L-Glutamic (C); no added vitamins -0.5 -0.5 -0.4 -0.6 -0.6
stress methylglyoxal 0.005 vol% -0.6 -0.5 -0.4 -0.3 -0.5
carbon source NAG (C) -0.0 -0.7 -0.7 -0.5 -0.4
stress Polymyxin B sulfate 0.1 mg/ml -0.4 -0.5 -0.5 -0.4 -0.5
motility inner cut, LB soft agar motility assay +0.8 +0.3 +0.6 +0.6 -0.2
motility inner cut, LB soft agar motility assay +0.5 +0.8 +0.5 +0.2 +0.3
temperature LB 37C +0.9 +0.4 +0.4 +0.4 +0.3
lb LB +0.8 +0.3 +0.5 +0.4 +0.4
nitrogen source L-Glutamic (N) +0.8 +0.4 +0.4 +0.4 +0.3
stress Lomefloxacin 0.01 mM +1.0 +0.3 +0.5 +0.3 +0.3
stress Dimethyl Sulfoxide 5 vol% +0.8 +0.4 +0.4 +0.5 +0.3
stress A22 0.02 mg/ml +0.8 +0.4 +0.5 +0.4 +0.5
lb LB +0.9 +0.5 +0.4 +0.5 +0.5
stress Cephalothin 0.3 mg/ml +1.0 +0.5 +0.5 +0.5 +0.4
stress A22 0.01 mg/ml +1.0 +0.5 +0.4 +0.5 +0.4
stress Doxycycline hyclate 0.0001 mg/ml +1.1 +0.4 +0.4 +0.5 +0.6
nitrogen source L-Proline (N) +0.8 +0.6 +0.5 +0.7 +0.6
nitrogen source L-Glutamine (N) +0.9 +0.6 +0.6 +0.6 +0.6
stress D-Cycloserine 0.064 mg/ml +1.1 +0.5 +0.5 +0.6 +0.6
nitrogen source L-Proline (N) +0.9 +0.8 +0.7 +0.6 +0.6
motility inner cut, LB soft agar motility assay +2.2 -0.3 +0.1 +0.7 +1.1
nitrogen source L-Glutamine (N) +0.8 +0.8 +0.7 +1.0 +0.6
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