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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3935 and Ga0059261_3936 overlap by 4 nucleotides
Ga0059261_3936 and Ga0059261_3937 are separated by 124 nucleotides
Ga0059261_3937 and Ga0059261_3938 overlap by 4 nucleotides
Ga0059261_3938 and Ga0059261_3939 are separated by 2 nucleotides
Ga0059261_3935: Ga0059261_3935 - hypothetical protein, at 4,050,747 to 4,051,943
_3935
Ga0059261_3936: Ga0059261_3936 - hypothetical protein, at 4,051,940 to 4,052,611
_3936
Ga0059261_3937: Ga0059261_3937 - Imidazolonepropionase and related amidohydrolases, at 4,052,736 to 4,054,160
_3937
Ga0059261_3938: Ga0059261_3938 - Imidazolonepropionase and related amidohydrolases, at 4,054,157 to 4,055,461
_3938
Ga0059261_3939: Ga0059261_3939 - transcriptional regulator, TetR family, at 4,055,464 to 4,056,117
_3939
Group
Condition
Ga0059261
_3935
Ga0059261
_3936
Ga0059261
_3937
Ga0059261
_3938
Ga0059261
_3939
stress
Paraquat dichloride 0.035 mg/ml
-0.3
-0.5
-0.9
-1.1
-1.3
stress
Vanillin 0.25 mM
-0.1
+0.0
-0.6
-0.9
-1.6
stress
nitrite 2.5 mM
-0.3
-0.4
-0.5
-0.7
-0.9
stress
1-ethyl-3-methylimidazolium chloride 20 mM
+0.0
-0.0
-0.7
-1.1
-0.9
nutrient
D-Cellobiose (C); no added vitamins
+0.3
+0.2
-0.9
-0.9
-1.1
stress
Vanillin 1 mM
+0.1
+0.1
-0.6
-0.8
-1.2
stress
Chloride 100 mM
-0.1
-0.1
-0.6
-0.6
-1.1
stress
Chloride 200 mM
-0.1
-0.2
-0.5
-0.7
-0.8
stress
nitrite 5 mM
-0.2
-0.1
-0.4
-0.7
-0.9
stress
methylglyoxal 0.005 vol%
-0.3
-0.4
-0.5
-0.5
-0.6
stress
1-ethyl-3-methylimidazolium chloride 10 mM
+0.1
-0.1
-0.6
-1.0
-0.6
nutrient
L-Glutamic (C); no added vitamins
+0.1
-0.0
-0.6
-0.7
-0.9
nutrient
D-Cellobiose (C); no added vitamins
+0.4
+0.3
-0.7
-0.8
-1.2
motility
outer cut, LB soft agar motility assay
+0.7
+0.1
-0.3
-0.7
-1.4
carbon source
D-Raffinose (C)
+0.1
+0.4
-0.5
-0.6
-0.6
nitrogen source
L-Glutamic (N)
+0.5
+0.2
+0.6
+0.6
+0.5
nitrogen source
L-Glutamic (N)
+0.3
+0.4
+0.7
+0.7
+0.6
stress
Fusidic 0.0005 mg/ml
+0.1
+0.1
+0.8
+1.0
+0.7
nitrogen source
L-Glutamine (N)
+0.4
+0.2
+0.8
+0.9
+0.8
stress
Nalidixic 0.025 mg/ml
+0.0
+0.1
+1.0
+1.0
+1.0
nitrogen source
L-Alanine (N)
+0.4
+0.3
+0.9
+1.0
+0.7
nitrogen source
L-Proline (N)
+0.2
+0.1
+0.9
+1.1
+1.0
stress
Tetracycline 0.001 mg/ml
-0.0
-0.0
+1.0
+1.1
+1.3
stress
Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.3
+1.2
+1.2
+0.8
stress
Tetracycline 0.002 mg/ml
-0.0
+0.2
+1.1
+1.3
+1.6
nitrogen source
L-Proline (N)
+0.4
+0.2
+1.3
+1.7
+1.5
stress
Nalidixic 0.05 mg/ml
-0.1
-0.1
+2.0
+2.2
+2.3
stress
Lomefloxacin 0.01 mM
+0.5
+0.3
+1.8
+2.0
+1.7
nitrogen source
L-Glutamine (N)
+0.4
+0.3
+1.6
+2.1
+2.1
stress
Lomefloxacin 0.02 mM
+0.4
+0.4
+2.5
+3.0
+3.0
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