Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3924 and Ga0059261_3925 are separated by 734 nucleotidesGa0059261_3925 and Ga0059261_3926 are separated by 22 nucleotidesGa0059261_3926 and Ga0059261_3927 are separated by 139 nucleotidesGa0059261_3927 and Ga0059261_3928 are separated by 114 nucleotides Ga0059261_3924: Ga0059261_3924 - Transposase DDE domain group 1, at 4,037,911 to 4,039,281 _3924 Ga0059261_3925: Ga0059261_3925 - Transcriptional regulators, at 4,040,016 to 4,040,594 _3925 Ga0059261_3926: Ga0059261_3926 - L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12), at 4,040,617 to 4,044,216 _3926 Ga0059261_3927: Ga0059261_3927 - hypothetical protein, at 4,044,356 to 4,045,480 _3927 Ga0059261_3928: Ga0059261_3928 - Predicted thioesterase, at 4,045,595 to 4,046,005 _3928
Group Condition Ga0059261_3924 Ga0059261_3925 Ga0059261_3926 Ga0059261_3927 Ga0059261_3928
nitrogen source L-Glutamine (N) N.D. -1.4 -0.9 +0.3 +0.3
stress Paraquat dichloride 0.035 mg/ml N.D. -0.4 -0.4 -0.2 -0.6
stress Vanillin 0.25 mM N.D. -0.9 -0.4 -0.1 -0.1
carbon source casaminos (C) N.D. -0.9 -0.7 +0.0 +0.0
stress syringaldehyde 0.5 mM N.D. -0.7 -0.5 -0.1 -0.0
carbon source L-Glutamine (C) N.D. -0.6 -0.5 -0.1 -0.1
nitrogen source L-Glutamine (N) N.D. -0.9 -0.6 +0.2 +0.2
stress 5-Hydroxymethylfurfural 1 mM N.D. -0.7 -0.4 -0.1 +0.2
carbon source casaminos (C) N.D. -0.5 -0.5 +0.0 +0.1
stress syringaldehyde 1 mM N.D. -0.5 -0.5 -0.0 +0.2
motility outer cut, LB soft agar motility assay N.D. -0.7 +0.6 +0.5 -0.5
temperature LB 30C N.D. -0.4 +0.1 +0.2 +0.5
nutrient D-Glucose (C); no added vitamins N.D. +0.5 +0.8 +0.3 -0.5
nutrient D-Cellobiose (C); no added vitamins N.D. +0.6 +0.9 -0.0 -0.2
stress Cephalothin 0.3 mg/ml N.D. +0.1 +0.2 +0.3 +0.7
nutrient D-Glucose (C); no added vitamins N.D. +0.6 +0.7 +0.0 +0.1
motility inner cut, LB soft agar motility assay N.D. -0.2 +0.7 +0.1 +0.8
motility inner cut, LB soft agar motility assay N.D. +0.3 +0.3 +0.2 +0.6
carbon source NAG (C) N.D. +0.7 +0.9 -0.0 -0.1
nutrient D-Cellobiose (C); no added vitamins N.D. +0.1 +0.9 +0.2 +0.2
nitrogen source L-Alanine (N) N.D. +0.6 +0.9 +0.1 +0.2
nitrogen source L-Proline (N) N.D. +1.1 +0.6 +0.2 -0.0
carbon source NAG (C) N.D. +0.7 +1.1 -0.1 +0.3
motility outer cut, LB soft agar motility assay N.D. +1.0 +0.6 +0.4 +0.1
carbon source D-Raffinose (C) N.D. +1.1 +1.2 +0.0 +0.4
carbon source D-Maltose (C) N.D. +1.3 +1.5 -0.1 -0.1
carbon source a-Cyclodextrin (C) N.D. +1.1 +1.5 +0.0 +0.1
carbon source a-Cyclodextrin (C) N.D. +1.2 +1.6 +0.0 +0.1
carbon source D-Maltose (C) N.D. +1.4 +1.9 +0.1 +0.0
nitrogen source L-Proline (N) N.D. +2.5 +1.9 +0.1 +0.1
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