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Cofit
Protein
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Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3847 and Ga0059261_3848 are separated by 16 nucleotides
Ga0059261_3848 and Ga0059261_3849 are separated by 22 nucleotides
Ga0059261_3849 and Ga0059261_3850 overlap by 19 nucleotides
Ga0059261_3850 and Ga0059261_3851 are separated by 341 nucleotides
Ga0059261_3847: Ga0059261_3847 - Beta-glucosidase-related glycosidases, at 3,947,152 to 3,949,101
_3847
Ga0059261_3848: Ga0059261_3848 - Tryptophan halogenase, at 3,949,118 to 3,950,623
_3848
Ga0059261_3849: Ga0059261_3849 - O-Glycosyl hydrolase, at 3,950,646 to 3,952,058
_3849
Ga0059261_3850: Ga0059261_3850 - Fucose permease, at 3,952,040 to 3,953,311
_3850
Ga0059261_3851: Ga0059261_3851 - DNA ligase, ATP-dependent, PP_1105 family, at 3,953,653 to 3,955,221
_3851
Group
Condition
Ga0059261
_3847
Ga0059261
_3848
Ga0059261
_3849
Ga0059261
_3850
Ga0059261
_3851
motility
inner cut, LB soft agar motility assay
-0.3
+0.0
-0.2
-0.3
-0.0
motility
inner cut, LB soft agar motility assay
-0.1
-0.1
-0.2
-0.1
-0.2
motility
inner cut, LB soft agar motility assay
-0.5
+0.2
-0.0
-0.2
-0.2
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-0.1
-0.0
-0.1
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium chloride 10 mM
-0.2
-0.1
+0.0
-0.1
-0.0
nutrient
D-Glucose (C); no added vitamins
+0.0
-0.1
-0.0
-0.2
-0.1
stress
D-Cycloserine 0.064 mg/ml
-0.1
-0.1
-0.0
-0.1
-0.1
nutrient
D-Cellobiose (C); no added vitamins
-0.1
-0.1
-0.0
+0.0
-0.1
nutrient
D-Cellobiose (C); no added vitamins
+0.0
-0.1
-0.2
-0.1
+0.0
stress
Cephalothin 0.3 mg/ml
-0.1
+0.0
+0.0
-0.2
-0.1
stress
Cisplatin 0.025 mg/ml
+0.0
+0.1
-0.0
+0.0
-0.4
motility
inner cut, LB soft agar motility assay
-0.2
-0.1
+0.1
-0.2
+0.1
stress
Paraquat dichloride 0.045 mg/ml
-0.1
-0.1
+0.1
-0.1
-0.0
stress
Cisplatin 0.01 mg/ml
+0.1
+0.0
+0.1
+0.0
-0.3
stress
perchlorate 50 mM
-0.0
+0.1
-0.1
-0.1
+0.1
stress
Vanillin 1 mM
+0.1
-0.0
+0.1
-0.1
-0.1
stress
syringaldehyde 0.5 mM
+0.1
-0.0
+0.1
-0.2
+0.1
carbon source
D-Maltose (C)
+0.1
-0.1
+0.1
-0.1
+0.0
stress
Sisomicin 0.12 mg/ml
+0.1
+0.0
-0.1
+0.0
+0.1
carbon source
D-Glucose (C)
-0.0
+0.0
+0.1
+0.2
-0.1
stress
Thallium(I) acetate 0.005 mg/ml
+0.2
-0.1
-0.0
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
+0.2
-0.1
-0.2
+0.1
carbon source
D-Glucose (C)
+0.1
-0.0
-0.1
+0.3
-0.0
stress
Zinc 1.25 mM
+0.1
-0.1
+0.0
+0.1
+0.0
stress
Cobalt chloride 0.08 mM
+0.3
-0.1
+0.0
+0.1
-0.0
stress
nitrate 100 mM
+0.1
+0.0
-0.1
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.0
+0.1
-0.2
+0.7
-0.3
carbon source
D-Glucose (C)
+0.1
-0.0
+0.1
+0.1
+0.1
carbon source
D-Maltose (C)
+0.2
+0.0
+0.1
+0.0
+0.0
stress
nitrite 10 mM
+0.1
+0.1
-0.0
+0.0
+0.2
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