Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3300 and Ga0059261_3301 are separated by 3 nucleotidesGa0059261_3301 and Ga0059261_3302 are separated by 53 nucleotidesGa0059261_3302 and Ga0059261_3303 are separated by 47 nucleotidesGa0059261_3303 and Ga0059261_3304 are separated by 133 nucleotides Ga0059261_3300: Ga0059261_3300 - hypothetical protein, at 3,427,635 to 3,428,603 _3300 Ga0059261_3301: Ga0059261_3301 - Cyanate permease, at 3,428,607 to 3,429,794 _3301 Ga0059261_3302: Ga0059261_3302 - Helix-turn-helix domain, at 3,429,848 to 3,430,393 _3302 Ga0059261_3303: Ga0059261_3303 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 3,430,441 to 3,431,385 _3303 Ga0059261_3304: Ga0059261_3304 - transcriptional regulator, ArsR family, at 3,431,519 to 3,431,842 _3304
Group Condition Ga0059261_3300 Ga0059261_3301 Ga0059261_3302 Ga0059261_3303 Ga0059261_3304
motility inner cut, LB soft agar motility assay +0.2 -0.8 N.D. -0.3 N.D.
motility inner cut, LB soft agar motility assay +0.2 -0.6 N.D. -0.4 N.D.
stress L-Lysine 50 mM -0.0 -0.3 N.D. -0.4 N.D.
nutrient D-Glucose (C); no added vitamins -0.1 -0.1 N.D. -0.4 N.D.
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -0.0 -0.1 N.D. -0.4 N.D.
stress Gentamicin 0.005 mg/ml -0.1 -0.3 N.D. -0.2 N.D.
nutrient D-Cellobiose (C); no added vitamins -0.1 -0.2 N.D. -0.3 N.D.
stress Choline chloride 40 mM -0.1 -0.2 N.D. -0.3 N.D.
carbon source D-Glucose (C) -0.1 +0.1 N.D. -0.4 N.D.
motility inner cut, LB soft agar motility assay -0.3 -0.2 N.D. +0.1 N.D.
motility outer cut, LB soft agar motility assay +0.1 -0.4 N.D. -0.1 N.D.
carbon source D-Glucose (C) +0.1 +0.0 N.D. -0.5 N.D.
pH LB, pH8 -0.2 -0.3 N.D. +0.2 N.D.
motility inner cut, LB soft agar motility assay -0.3 -0.4 N.D. +0.4 N.D.
nitrogen source L-Proline (N) +0.1 -0.3 N.D. -0.1 N.D.
carbon source L-Glutamic (C) -0.2 +0.2 N.D. -0.2 N.D.
carbon source NAG (C) +0.2 +0.0 N.D. -0.3 N.D.
stress Choline Lysine 5 mM -0.2 +0.3 N.D. -0.1 N.D.
stress 5-Hydroxymethylfurfural 1 mM -0.1 -0.2 N.D. +0.3 N.D.
stress Fusidic 0.0005 mg/ml +0.1 -0.3 N.D. +0.2 N.D.
pH LB, pH6 -0.1 -0.3 N.D. +0.4 N.D.
stress D-Cycloserine 0.064 mg/ml +0.2 -0.3 N.D. +0.3 N.D.
stress Chloride 200 mM -0.1 +0.4 N.D. -0.1 N.D.
motility outer cut, LB soft agar motility assay +0.0 +0.5 N.D. -0.2 N.D.
stress Cisplatin 0.01 mg/ml -0.1 +0.2 N.D. +0.2 N.D.
stress Doxycycline hyclate 0.0001 mg/ml +0.2 -0.2 N.D. +0.3 N.D.
nutrient D-Glucose (C); no added vitamins +0.2 +0.4 N.D. -0.2 N.D.
carbon source D-Xylose (C) -0.1 +0.4 N.D. +0.1 N.D.
carbon source a-Cyclodextrin (C) -0.1 +0.3 N.D. +0.3 N.D.
stress Chloride 100 mM +0.1 +0.3 N.D. +0.3 N.D.
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