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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3297 and Ga0059261_3298 are separated by 161 nucleotides
Ga0059261_3298 and Ga0059261_3299 are separated by 71 nucleotides
Ga0059261_3299 and Ga0059261_3300 are separated by 118 nucleotides
Ga0059261_3300 and Ga0059261_3301 are separated by 3 nucleotides
Ga0059261_3297: Ga0059261_3297 - Uncharacterized protein conserved in bacteria, at 3,425,218 to 3,425,907
_3297
Ga0059261_3298: Ga0059261_3298 - Opacity protein and related surface antigens, at 3,426,069 to 3,426,887
_3298
Ga0059261_3299: Ga0059261_3299 - Secreted and surface protein containing fasciclin-like repeats, at 3,426,959 to 3,427,516
_3299
Ga0059261_3300: Ga0059261_3300 - hypothetical protein, at 3,427,635 to 3,428,603
_3300
Ga0059261_3301: Ga0059261_3301 - Cyanate permease, at 3,428,607 to 3,429,794
_3301
Group
Condition
Ga0059261
_3297
Ga0059261
_3298
Ga0059261
_3299
Ga0059261
_3300
Ga0059261
_3301
motility
inner cut, LB soft agar motility assay
-0.6
+0.4
-0.3
-0.3
-0.4
motility
inner cut, LB soft agar motility assay
-0.3
-0.1
+0.1
-0.3
-0.2
stress
Carbenicillin 0.03 mg/ml
-0.0
-0.1
-0.0
-0.1
-0.4
nutrient
D-Glucose (C) and 0.25mM L-Methionine; no added vitamins
-0.3
-0.1
-0.2
-0.1
+0.0
pH
LB, pH8
+0.1
-0.1
-0.0
-0.2
-0.3
carbon source
D-Glucose (C)
-0.3
-0.0
+0.2
-0.1
-0.1
motility
inner cut, LB soft agar motility assay
+0.0
-0.1
+0.2
+0.2
-0.8
nutrient
D-Glucose (C); no added vitamins
-0.4
+0.1
+0.2
-0.1
-0.1
temperature
LB 37C
-0.2
-0.1
+0.1
+0.0
-0.2
carbon source
NAG (C)
-0.1
+0.1
+0.1
-0.1
-0.2
stress
D-Cycloserine 0.064 mg/ml
-0.2
-0.0
+0.1
+0.2
-0.3
pH
LB, pH6
+0.2
-0.1
+0.1
-0.1
-0.3
nitrogen source
L-Proline (N)
-0.0
-0.0
+0.1
+0.1
-0.3
carbon source
L-Glutamic (C)
-0.2
+0.1
+0.0
-0.2
+0.2
stress
L-Lysine 50 mM
+0.1
+0.1
+0.1
-0.0
-0.3
motility
outer cut, LB soft agar motility assay
+0.3
+0.3
-0.4
+0.1
-0.4
carbon source
D-Glucose (C)
+0.1
+0.0
+0.1
+0.1
-0.3
stress
nitrite 5 mM
-0.3
-0.0
+0.0
+0.0
+0.3
pH
LB, pH7
+0.2
+0.0
+0.1
-0.1
-0.2
nutrient
D-Glucose (C); no added vitamins
-0.3
+0.1
-0.2
+0.2
+0.4
carbon source
D-Xylose (C)
-0.2
-0.0
+0.1
-0.1
+0.4
motility
inner cut, LB soft agar motility assay
+0.8
-0.2
-0.0
+0.2
-0.6
stress
Chloramphenicol 0.0005 mg/ml
+0.3
-0.0
-0.0
-0.1
+0.1
stress
Choline Lysine 5 mM
+0.1
+0.0
+0.0
-0.2
+0.3
stress
Cisplatin 0.01 mg/ml
+0.1
-0.0
+0.1
-0.1
+0.2
stress
Chloride 100 mM
-0.2
+0.2
+0.0
+0.1
+0.3
carbon source
casaminos (C)
+0.3
+0.1
-0.0
-0.1
+0.2
stress
Chloride 200 mM
+0.1
+0.1
+0.1
-0.1
+0.4
carbon source
a-Cyclodextrin (C)
+0.2
+0.0
+0.2
-0.1
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
+0.1
+0.5
+0.0
+0.5
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